View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12085_low_9 (Length: 402)
Name: NF12085_low_9
Description: NF12085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12085_low_9 |
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| [»] scaffold0703 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Complemental strand, 53986628 - 53986256
Alignment:
| Q |
15 |
ggcagaatcacatatgcatctattctttgtgtgcactaaagctatggactgttgggatcgtattaatttgggaaaccatattcgcgagctgctgcaccgg |
114 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53986628 |
ggcagaatcacacatgcatctattctttgtgtgcactaaagctatggactgttgggatcgtattaatttgggaaaccatattcgcgagctgctgcaccgg |
53986529 |
T |
|
| Q |
115 |
gctaatgattttactactatgttgtttgattttcttgacaggttaccctcatatcaacaacatgcagccgcaatgttactttggagtttgtggaagagtc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53986528 |
gctaatgattttactactatgttgtttgattttcttgacaggttaccctcatatcaacaacacgcagccgcaatgttactttggagtttgtggaagagtc |
53986429 |
T |
|
| Q |
215 |
gtaacattaagttgtgggattctttagacactactactgcttcgactgtttctagagcgaaggatacatttcacgaatggagatgtatgcaacgagctag |
314 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53986428 |
gtaacataaagttgtgggattctttagacactactactgcttcgactgtttctagagcgaaggatacacttcacgaatggagatgtatgcaacgagctag |
53986329 |
T |
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| Q |
315 |
acctcaacctcaaaatcaggaccacataatctcttggaagaaacctccagaaggtgtcctaaagtgtaacatc |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53986328 |
acctcaacctcaaaatcaggaccacataatctcttggaagaagcctccagaaggtgtcctaaagtgtaacatc |
53986256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Complemental strand, 12459542 - 12459170
Alignment:
| Q |
15 |
ggcagaatcacatatgcatctattctttgtgtgcactaaagctatggactgttgggatcgtattaatttgggaaaccatattcgcgagctgctgcaccgg |
114 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12459542 |
ggcagaatcacacatgcatctattctttgtgtgcactaaagctatggactgttgggatcgtattaatttgggaaaccatattcgcgagctgctgcaccgg |
12459443 |
T |
|
| Q |
115 |
gctaatgattttactactatgttgtttgattttcttgacaggttaccctcatatcaacaacatgcagccgcaatgttactttggagtttgtggaagagtc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12459442 |
gctaatgattttactactatgttgtttgattttcttgacaggttaccctcatatcaacaacatgcagccgcaatgttactttggagtttgtggaagagtc |
12459343 |
T |
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| Q |
215 |
gtaacattaagttgtgggattctttagacactactactgcttcgactgtttctagagcgaaggatacatttcacgaatggagatgtatgcaacgagctag |
314 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
12459342 |
gtaacataaagttgtgggattctttagacactactactgcttcaactgtttctagagcgaaggatacacttcacgaatggagatgtatgcaacgagctag |
12459243 |
T |
|
| Q |
315 |
acctcaacctcaaaatcaggaccacataatctcttggaagaaacctccagaaggtgtcctaaagtgtaacatc |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12459242 |
acctcaacctcaaaatcaggaccacataatctcttggaagaagcctccagaaggtgtcctaaagtgtaacatc |
12459170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 55 - 212
Target Start/End: Original strand, 14647986 - 14648143
Alignment:
| Q |
55 |
gctatggactgttgggatcgtattaatttgggaaaccatattcgcgagctgctgcaccgggctaatgattttactactatgttgtttgattttcttgaca |
154 |
Q |
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|||||||| |||||||||| |||| ||||||| || ||||| |||||||| || | ||||||||||| ||| |||||||||||||||||||| ||| |
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| T |
14647986 |
gctatggaatgttgggatcatattgggatgggaaatcaaattcgtgagctgctccaacaagctaatgatttcacttctatgttgtttgattttcttaaca |
14648085 |
T |
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| Q |
155 |
ggttaccctcatatcaacaacatgcagccgcaatgttactttggagtttgtggaagag |
212 |
Q |
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||||| | ||| |||||||| ||||||| |||||| |||||||||||||||||| |
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| T |
14648086 |
ggttatctctataccaacaacaaacagccgccatgttatgttggagtttgtggaagag |
14648143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Complemental strand, 434 - 62
Alignment:
| Q |
15 |
ggcagaatcacatatgcatctattctttgtgtgcactaaagctatggactgttgggatcgtattaatttgggaaaccatattcgcgagctgctgcaccgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
434 |
ggcagaatcacatatgcatctattctttgtgtgcactaaagctatggactgttgggatcgtattaatttgggaaaccatattcgcgagctgctgcatcgg |
335 |
T |
|
| Q |
115 |
gctaatgattttactactatgttgtttgattttcttgacaggttaccctcatatcaacaacatgcagccgcaatgttactttggagtttgtggaagagtc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
334 |
gctaatgattttactactatgttgtttgattttcttgacaggttaccctcatatcaacaacacgcagccgcaatgttactttggagtttgtggaagagtc |
235 |
T |
|
| Q |
215 |
gtaacattaagttgtgggattctttagacactactactgcttcgactgtttctagagcgaaggatacatttcacgaatggagatgtatgcaacgagctag |
314 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
234 |
gtaacataaagttgtgggattctttagacactactactgcttctactgtttctagagcgaaggatacacttcacgaatggagatgtatgcaacgagctag |
135 |
T |
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| Q |
315 |
acctcaacctcaaaatcaggaccacataatctcttggaagaaacctccagaaggtgtcctaaagtgtaacatc |
387 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
134 |
acctcaacctcaaaatcaggaccacataacctcttggaagaaacctccagaaggtgtcctaaagtgtaacatc |
62 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 16862566 - 16862938
Alignment:
| Q |
15 |
ggcagaatcacatatgcatctattctttgtgtgcactaaagctatggactgttgggatcgtattaatttgggaaaccatattcgcgagctgctgcaccgg |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16862566 |
ggcagaatcacatatgcatctattctttgtgtgcactaaagctatggactgttgggatcgtattaatttgggaaaccatattcgcgagctgctgcaccgg |
16862665 |
T |
|
| Q |
115 |
gctaatgattttactactatgttgtttgattttcttgacaggttaccctcatatcaacaacatgcagccgcaatgttactttggagtttgtggaagagtc |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16862666 |
gctaatgattttactattatgttgtttgattttcttgacaggttaccctcatatcaacaacacgcagccgcaatgttactttggagtttgtggaagagtc |
16862765 |
T |
|
| Q |
215 |
gtaacattaagttgtgggattctttagacactactactgcttcgactgtttctagagcgaaggatacatttcacgaatggagatgtatgcaacgagctag |
314 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16862766 |
gtaacataaagttgtgggattctttagacactactactgcttcgactgtttctagagcgaaggatacgcttcacgaatggagatgtatgcaacgagctag |
16862865 |
T |
|
| Q |
315 |
acctcaacctcaaaatcaggaccacataatctcttggaagaaacctccagaaggtgtcctaaagtgtaacatc |
387 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16862866 |
acctcaacctcaaaatcaggaccacataacctcttggaagaaacctccagaaggtgtcctaaagtgtaacatc |
16862938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 212
Target Start/End: Complemental strand, 21730481 - 21730384
Alignment:
| Q |
115 |
gctaatgattttactactatgttgtttgattttcttgacaggttaccctcatatcaacaacatgcagccgcaatgttactttggagtttgtggaagag |
212 |
Q |
| |
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||||||||||| ||| |||| ||||||||||||||| |||||||| | ||| |||||||| || || | |||||| |||||||||||||||||| |
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| T |
21730481 |
gctaatgatttcacttctatattgtttgattttcttaacaggttatctctataccaacaacaaacaacctccatgttatgttggagtttgtggaagag |
21730384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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