View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12086_high_9 (Length: 412)
Name: NF12086_high_9
Description: NF12086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12086_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 130 - 399
Target Start/End: Complemental strand, 40796587 - 40796318
Alignment:
| Q |
130 |
tttgacaaattggagctttgtaaagagaataaacccaaacctgaatccggcttaatcacttaacagctatggttgtactaaacagaaaataatagtacta |
229 |
Q |
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| T |
40796587 |
tttgacaaattggagctttgtaaagagaataaacccaaacctgaatccggcttaatcacttaacagctatggttgtacaaaacagaaaataatagtacta |
40796488 |
T |
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| Q |
230 |
attgttttactcaaacacattcaacatcagatgataaacaataaaacaacatcaaaatacattgagtgtttctgttgccaaacaacataaacatttacag |
329 |
Q |
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| T |
40796487 |
attgttttactcaaacacattctacatcagatgataaacaataaatcaacatcaaaatacattgagtgtttctgttgtcaaacaacataaacatttacag |
40796388 |
T |
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| Q |
330 |
ccaccgaaaggaattagatcaggtattcttgacaaatgcaataagacagataatagtttatgtaaaatat |
399 |
Q |
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| T |
40796387 |
ccaccgaaaggaattagatcaggtattcttgacaaatgcaataagacagataatagtttatgtaaaatat |
40796318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 40796753 - 40796629
Alignment:
| Q |
9 |
aatgaaagcacatgacaccagaatacaaaacaacaaagactggtaggcttagagaggatacatacatgcttataggctatagcactctccctcatgtaag |
108 |
Q |
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| T |
40796753 |
aatgaaagcacatgacaccagaatacaaaacaacaaagactggtaggcttagagaggatacatacatgcttataggctatagcactctccctcatgtaag |
40796654 |
T |
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| Q |
109 |
cagacacggaactcggtgcaatttg |
133 |
Q |
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| T |
40796653 |
cagacacagaactcggtgcaatttg |
40796629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 18307595 - 18307559
Alignment:
| Q |
9 |
aatgaaagcacatgacaccagaatacaaaacaacaaa |
45 |
Q |
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| T |
18307595 |
aatgaaagcacatgacaccgaaatacaaaacaacaaa |
18307559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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