View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12086_low_1 (Length: 1190)

Name: NF12086_low_1
Description: NF12086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12086_low_1
NF12086_low_1
[»] chr3 (23 HSPs)
chr3 (395-1174)||(38626744-38627524)
chr3 (2-441)||(48089641-48090080)
chr3 (398-479)||(42644297-42644379)
chr3 (407-480)||(39657982-39658055)
chr3 (207-263)||(52925733-52925789)
chr3 (357-487)||(25129444-25129575)
chr3 (395-479)||(30958124-30958209)
chr3 (395-479)||(30973936-30974021)
chr3 (195-263)||(3845234-3845302)
chr3 (399-439)||(7012676-7012716)
chr3 (399-479)||(31766160-31766240)
chr3 (397-448)||(40415312-40415363)
chr3 (267-365)||(43987578-43987677)
chr3 (408-487)||(49158621-49158700)
chr3 (407-437)||(24916584-24916614)
chr3 (394-480)||(32112081-32112167)
chr3 (197-263)||(39256572-39256638)
chr3 (284-389)||(4193993-4194097)
chr3 (402-439)||(10852738-10852775)
chr3 (402-439)||(23918881-23918918)
chr3 (377-438)||(26800595-26800656)
chr3 (398-479)||(41115275-41115356)
chr3 (399-480)||(44225601-44225682)
[»] chr6 (7 HSPs)
chr6 (195-437)||(29240407-29240642)
chr6 (394-443)||(25208713-25208762)
chr6 (394-486)||(1499987-1500079)
chr6 (422-474)||(9043722-9043774)
chr6 (195-263)||(31812204-31812272)
chr6 (365-441)||(882743-882820)
chr6 (394-443)||(20846414-20846463)
[»] chr4 (16 HSPs)
chr4 (318-389)||(37561448-37561519)
chr4 (194-243)||(37339315-37339364)
chr4 (346-389)||(4451496-4451539)
chr4 (394-435)||(17898085-17898126)
chr4 (399-480)||(39000531-39000612)
chr4 (398-438)||(36150624-36150664)
chr4 (399-479)||(38740287-38740367)
chr4 (408-480)||(48575485-48575557)
chr4 (318-437)||(29468588-29468706)
chr4 (267-329)||(2171747-2171809)
chr4 (328-362)||(21592432-21592466)
chr4 (395-437)||(33843799-33843841)
chr4 (410-480)||(43868239-43868309)
chr4 (319-365)||(51093269-51093315)
chr4 (277-378)||(18597009-18597110)
chr4 (399-436)||(54487248-54487285)
[»] chr1 (18 HSPs)
chr1 (310-389)||(36413758-36413837)
chr1 (414-468)||(47307505-47307559)
chr1 (399-439)||(29759711-29759751)
chr1 (208-263)||(8381892-8381947)
chr1 (304-487)||(12655241-12655424)
chr1 (310-365)||(28024461-28024516)
chr1 (399-465)||(4347034-4347100)
chr1 (402-479)||(13344836-13344913)
chr1 (407-443)||(7335901-7335937)
chr1 (196-252)||(41516883-41516939)
chr1 (394-477)||(3887364-3887446)
chr1 (310-389)||(24697602-24697680)
chr1 (394-437)||(47978389-47978432)
chr1 (394-443)||(32365134-32365183)
chr1 (398-439)||(40352450-40352491)
chr1 (310-363)||(41516990-41517043)
chr1 (353-441)||(48832935-48833024)
chr1 (198-239)||(52013623-52013664)
[»] chr2 (16 HSPs)
chr2 (267-389)||(11510913-11511034)
chr2 (208-265)||(16013831-16013888)
chr2 (207-263)||(37649596-37649652)
chr2 (357-437)||(10918605-10918686)
chr2 (398-443)||(11005710-11005755)
chr2 (399-480)||(12110919-12111000)
chr2 (394-443)||(31224720-31224769)
chr2 (198-263)||(43717240-43717305)
chr2 (310-434)||(44439256-44439381)
chr2 (410-466)||(3716571-3716627)
chr2 (195-263)||(7629757-7629825)
chr2 (399-439)||(23359953-23359993)
chr2 (200-263)||(1976987-1977050)
chr2 (399-438)||(3853945-3853984)
chr2 (409-480)||(40704682-40704753)
chr2 (399-436)||(15220817-15220854)
[»] chr7 (9 HSPs)
chr7 (277-437)||(27571832-27571992)
chr7 (407-443)||(26975305-26975341)
chr7 (407-479)||(42481803-42481875)
chr7 (399-478)||(15311189-15311268)
chr7 (314-360)||(34439901-34439947)
chr7 (197-263)||(38123770-38123836)
chr7 (407-436)||(18350120-18350149)
chr7 (273-389)||(21436002-21436119)
chr7 (394-439)||(38230120-38230165)
[»] scaffold0172 (1 HSPs)
scaffold0172 (399-480)||(15241-15322)
[»] chr8 (10 HSPs)
chr8 (267-439)||(14930089-14930262)
chr8 (199-263)||(11038081-11038145)
chr8 (399-439)||(19649230-19649270)
chr8 (195-263)||(39648267-39648335)
chr8 (205-259)||(8916851-8916905)
chr8 (195-265)||(32767278-32767348)
chr8 (338-388)||(43123157-43123206)
chr8 (394-439)||(3467572-3467617)
chr8 (410-479)||(18123329-18123398)
chr8 (399-480)||(29970846-29970927)
[»] chr5 (13 HSPs)
chr5 (399-443)||(2483732-2483776)
chr5 (207-263)||(3043126-3043182)
chr5 (310-378)||(10859853-10859921)
chr5 (399-439)||(22811076-22811116)
chr5 (400-443)||(2868371-2868414)
chr5 (394-464)||(5465398-5465468)
chr5 (394-464)||(6988207-6988277)
chr5 (195-261)||(15368138-15368204)
chr5 (398-436)||(24036622-24036660)
chr5 (399-464)||(621291-621356)
chr5 (371-443)||(28304821-28304894)
chr5 (195-236)||(29794095-29794136)
chr5 (399-476)||(29922992-29923069)
[»] scaffold0393 (1 HSPs)
scaffold0393 (194-228)||(12465-12499)


Alignment Details
Target: chr3 (Bit Score: 697; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 395 - 1174
Target Start/End: Original strand, 38626744 - 38627524
Alignment:
Q  395 aatatatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtcacattcagt 494  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626744 aatatgtccaaacataaatcatttcacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtcacattcagt 38626843  T
Q  495 tagagacaaatacacaagcaacttctatgcaatactgctgttggaacttgcaatgacagcagacgagtcgggttaaacgaatcaaatacctgcaattgat 594  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626844 tagagacaaatacacaagcaacttctatgcaatactactgttggaacttgcaatgacagcagacgagtcgggttaaacgaatcaaatacctgcaattgat 38626943  T
Q  595 gatcaatctccgtttccggatccctcatgtgatggccatgggtattaaaactaagcgaagnnnnnnncggaacaaaatacacatcaacaacctccggatc 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  38626944 gatcaatctccgtttccggatccctcatgtgatggccatgggtattaaaactaagcgaagaaaaaaacggaacaaaatacacatcaacaacctccggatc 38627043  T
Q  695 caaaacccttaccgcttcacttccattgccaccgccgttaagaagcgaacccatcatccagtactctacactatgctgcctcctcaaaccctgattatca 794  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627044 caaaacccttaccgcttcacttccattgccaccaccgttaagaagcgaacccatcatccagtactctacactatgctgcctcctcaaaccctgattatca 38627143  T
Q  795 ggccacagcggataatcagcaatggtcaccggagcttccgttgtgttccggccgtcgagcattccgacgttgaaccggcgagggagatcgtacatgtaga 894  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627144 ggccacagcggataatcagcaatggtcaccggagcttccgttgtgttccggccgtcgagcattccgacgttgaaccggcgagggagatcgtacatgtaga 38627243  T
Q  895 ctcttaatggagcttcatcggcgcacggagtagttgcaataatcgacggtgattgttgataataagatcgaatgtccagtgttccgattaaaattgagca 994  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627244 ctcttaatggagcttcatcggcgcacggagtagttgcaataatcgacggtgattgttgataataagatcgaatgtccagtgttccgattaaaattgagca 38627343  T
Q  995 tggaatgaagatcagaagcgctaaggtgaaagaaataaccactttacctaaca-nnnnnnnnnaatttaatgatgtatataattttcttctaatgaaaat 1093  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  38627344 tggaatgaagatcagaagcgctaaggtgaaaaaaataaccactttacctaacattttttttttaatttaatgatgtatataattttcttctaatgaaaat 38627443  T
Q  1094 ttgtaagaagatgtagtgaagttgttaatggcgcagttggttcatttactttgtatttgtggtcagtggcaatgtggcatt 1174  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627444 ttgtaagaagatgcagtgaagttgttaatggcgcagttggttcatttactttgtatttgtggtcagtggcaatgtggcatt 38627524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 2 - 441
Target Start/End: Complemental strand, 48090080 - 48089641
Alignment:
Q  2 cagtaacaaatttaaaattttctttcaacaaattggatttgcgggttttaaatcctaaacatattagcccaaccaaacaacttcaagtctggttagttgg 101  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48090080 cagtaacaaatttaaaattttctttcaacaaattaaatttgcgggttttaaatcctaaacatattagcccaaccaaacaacttcaagtctggttggttgg 48089981  T
Q  102 ttcgagctcaacccaaacaacaacaatatcaaaccaaacactacaaattgtgttgcatgatcaggttgaccagtacccatgaaccccactgcttatgttt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48089980 ttcgagctcaacccaaacaacaacaatatcaaaccaaacactacaaattgtgttgcatgatcaggttgaccagtacccatgaaccccactgcttatgttt 48089881  T
Q  202 gttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgtttcgcgtttggatgttctcgagtaaaattgaatttacctc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48089880 gttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgtttcgcgtttggatgttctcgagtaaaattgaatttacctc 48089781  T
Q  302 cggaatcaattctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattgttcaacccactttatgcaaatatat 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48089780 cggaatcaattctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattgttcaacccactttatgcaaatgtat 48089681  T
Q  402 ccaatcataaatcattttacattcaactcacttttaacta 441  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48089680 ccaatcataaatcattttacattcaactcacttttaacta 48089641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 398 - 479
Target Start/End: Original strand, 42644297 - 42644379
Alignment:
Q  398 atatccaatcataaatcattttacattcaactcacttttaactaaagtcga-ctttacataatcaattcattaaaaatcaatt 479  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||| || |  |||| | |||||||||| | ||||||||||    
T  42644297 atatccaaacataaatcactttacattcaactcacttttaactaaaatcaatttttataaaatcaattcactcaaaatcaatt 42644379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 407 - 480
Target Start/End: Complemental strand, 39658055 - 39657982
Alignment:
Q  407 cataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 480  Q
    ||||||| ||||||||||||||  |||||||| |||| || | ||||||||||||||| ||| |||||||||||    
T  39658055 cataaattattttacattcaacgaacttttaagtaaaatcaattttacataatcaatttattcaaaatcaattt 39657982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 52925789 - 52925733
Alignment:
Q  207 cacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    |||||||||||||||||||||| ||||||||||| || || |||||| |||||||||    
T  52925789 cacttttggaggagtcaaaattgattctagaggtgtataattgattttgacatgttt 52925733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 357 - 487
Target Start/End: Complemental strand, 25129575 - 25129444
Alignment:
Q  357 ttttagcctcaaagttattgttcaacccacttt-atgcaaatatatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttaca 455  Q
    |||||||||| || |||||||| || ||||||| |   ||||| |||||| |||||||||  |||||||||||||||||||| |   | || | ||||||    
T  25129575 ttttagcctccaatttattgttaaatccacttttacataaatacatccaaacataaatcacgttacattcaactcacttttatcctgaatcaattttaca 25129476  T
Q  456 taatcaattcattaaaaatcaatttatgtcac 487  Q
      ||||||||||| || |||||||||||||||    
T  25129475 acatcaattcattcaagatcaatttatgtcac 25129444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 30958124 - 30958209
Alignment:
Q  395 aatatatccaatcataaatcat-tttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 479  Q
    ||||||||||| ||||||| |  |||||||||||||||| |||| | ||| || | |||||| |||||||||||| ||||||||||    
T  30958124 aatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaatcaatt 30958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 30973936 - 30974021
Alignment:
Q  395 aatatatccaatcataaatcat-tttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 479  Q
    ||||||||||| ||||||| |  |||||||||||||||| |||| | ||| || | |||||| |||||||||||| ||||||||||    
T  30973936 aatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaatcaatt 30974021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 3845302 - 3845234
Alignment:
Q  195 tatgtttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    |||||||| || ||||||||||| |  ||||||| ||||||||||| ||||| |||||| |||||||||    
T  3845302 tatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgttt 3845234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 7012676 - 7012716
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaac 439  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  7012676 tatccaaacataaatcactttacattcaactcacttttaac 7012716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 399 - 479
Target Start/End: Complemental strand, 31766240 - 31766160
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 479  Q
    ||||||| ||||||||| ||||  ||||||||||||||| | ||| |  | |||||| |||||||||||| ||||||||||    
T  31766240 tatccaaacataaatcactttaacttcaactcacttttatccaaaattaattttacaaaatcaattcattcaaaatcaatt 31766160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 397 - 448
Target Start/End: Complemental strand, 40415363 - 40415312
Alignment:
Q  397 tatatccaatcataaatcattttacattcaactcacttttaactaaagtcga 448  Q
    ||||||||| ||||||| | ||||||| ||||||||||||||||||| ||||    
T  40415363 tatatccaaacataaattaatttacatccaactcacttttaactaaaatcga 40415312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 365
Target Start/End: Complemental strand, 43987677 - 43987578
Alignment:
Q  267 gtttggatgttctcgagtaaaattgaatttacctccggaatcaattctaatttgaagttagaacttgaagcttttgcct-ctacaaatgatttttagcct 365  Q
    ||||||||||||| ||||| |||||| |||  || | ||||||||||||| | |||| ||||| ||| || ||||| || |||||| |||||||||||||    
T  43987677 gtttggatgttcttgagtacaattgattttgtctacagaatcaattctaactggaagctagaatttgtagtttttgactcctacaattgatttttagcct 43987578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 408 - 487
Target Start/End: Original strand, 49158621 - 49158700
Alignment:
Q  408 ataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtcac 487  Q
    ||||||||| ||| |||| | ||||||||| || || || | |||||| |||||||||||| ||||||||||||| ||||    
T  49158621 ataaatcatcttatattctagtcacttttatcttaaatcaattttacaaaatcaattcattcaaaatcaatttatatcac 49158700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 407 - 437
Target Start/End: Original strand, 24916584 - 24916614
Alignment:
Q  407 cataaatcattttacattcaactcactttta 437  Q
    |||||||||||||||||||||||||||||||    
T  24916584 cataaatcattttacattcaactcactttta 24916614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 32112081 - 32112167
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 480  Q
    ||||| |||||| ||||||| | ||| ||||||||||| ||||| | | | || | ||||||||||||||||| | |||||||||||    
T  32112081 aaataaatccaaacataaattacttttcattcaactcatttttatccataatcaattttacataatcaattcactcaaaatcaattt 32112167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 39256572 - 39256638
Alignment:
Q  197 tgtttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    |||||| || ||||||||||| | ||||||||  |||||||||| ||||| |||||| |||||||||    
T  39256572 tgtttggttccacttttggagaaatcaaaattagttctagaggtgtagaattgattttgacatgttt 39256638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 389
Target Start/End: Complemental strand, 4194097 - 4193993
Alignment:
Q  284 taaaattgaatttacctccggaatcaattctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattgttcaacc 383  Q
    ||||||||| ||  ||||| ||||  ||||||| || ||| ||||| ||||||  ||||||||||||| |||||||||||||| || |||| || |||||    
T  4194097 taaaattgatttggcctccagaattgattctaactt-aagctagaatttgaagtgtttgcctctacaattgatttttagcctctaatttatcgtgcaacc 4193999  T
Q  384 cacttt 389  Q
    | ||||    
T  4193998 cccttt 4193993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 10852775 - 10852738
Alignment:
Q  402 ccaatcataaatcattttacattcaactcacttttaac 439  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  10852775 ccaaacataaatcactttacattcaactcacttttaac 10852738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 23918881 - 23918918
Alignment:
Q  402 ccaatcataaatcattttacattcaactcacttttaac 439  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  23918881 ccaaacataaatcactttacattcaactcacttttaac 23918918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 377 - 438
Target Start/End: Original strand, 26800595 - 26800656
Alignment:
Q  377 ttcaacccactttatgcaaatatatccaatcataaatcattttacattcaactcacttttaa 438  Q
    ||||||| | ||||||| |||||||| || ||||||||||||||  ||||||||| ||||||    
T  26800595 ttcaaccaattttatgcgaatatatcaaaacataaatcattttaatttcaactcatttttaa 26800656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 398 - 479
Target Start/End: Complemental strand, 41115356 - 41115275
Alignment:
Q  398 atatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 479  Q
    |||||||| |||||| |||||||||||||||||| | ||| | ||| || | | |||| |||||||||||| | ||||||||    
T  41115356 atatccaaacataaaccattttacattcaactcattgttagccaaaatcaattatacaaaatcaattcattcataatcaatt 41115275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 44225601 - 44225682
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 480  Q
    ||||||| ||||||||| |||||||| |||||||||||||| ||| || | | |||| ||||||||   | |||||||||||    
T  44225601 tatccaaacataaatcactttacattaaactcacttttaacgaaaatcaattctacaaaatcaattatattaaaatcaattt 44225682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 5e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 195 - 437
Target Start/End: Complemental strand, 29240642 - 29240407
Alignment:
Q  195 tatgtttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgtttcgcgtttggatgttctcgagtaaaattgaat 294  Q
    |||||||| || ||||||||| ||| |||||||| ||||||||||| || || |||||| |||||       ||| |||| || || |||| |||||| |    
T  29240642 tatgtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaattgattttgacat-------gttaggatattttcaagtagaattgatt 29240550  T
Q  295 ttacctccggaatcaattctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattgttcaacccactttatgca 394  Q
    |||||||| || |  ||||||| |||||| || || |||||| ||||||| |||||| ||| |||||||||| || ||||||  ||||||  | ||        
T  29240549 ttacctccagagttgattctaacttgaagctaaaatttgaagtttttgcccctacaattgaattttagcctcgaatttattgaccaacccgttatacatg 29240450  T
Q  395 aatatatccaatcataaatcattttacattcaactcactttta 437  Q
    |||  |||||| ||||||| | |||||||||||||||||||||    
T  29240449 aatgcatccaaacataaatgaatttacattcaactcactttta 29240407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 25208713 - 25208762
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcacttttaactaaa 443  Q
    |||| |||| || |||||||||||||||||||||||||||||||| ||||    
T  25208713 aaatctatcgaaacataaatcattttacattcaactcacttttaattaaa 25208762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 394 - 486
Target Start/End: Original strand, 1499987 - 1500079
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtca 486  Q
    |||| ||| ||| ||||||||| |||||| ||||||| |||||| | ||| || | |||||| |||||||||| | ||||||||||| |||||    
T  1499987 aaatgtattcaaacataaatcaatttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaaaatcaatttttgtca 1500079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 422 - 474
Target Start/End: Complemental strand, 9043774 - 9043722
Alignment:
Q  422 attcaactcacttttaactaaagtcgactttacataatcaattcattaaaaat 474  Q
    |||||||||||||||||||||| || | | |||| ||||||||||||||||||    
T  9043774 attcaactcacttttaactaaaatcaattatacaaaatcaattcattaaaaat 9043722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 31812204 - 31812272
Alignment:
Q  195 tatgtttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    |||||||| |||||||||||||| |  ||||||| ||| ||||||| ||||| |||||| |||||||||    
T  31812204 tatgtttggtttcacttttggagtaagcaaaattcattatagaggtctagaattgattttgacatgttt 31812272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 365 - 441
Target Start/End: Original strand, 882743 - 882820
Alignment:
Q  365 tcaaagttattgttcaacccactttatgca--aatatatccaatcataaatcattttacattcaactcacttttaacta 441  Q
    ||||| |||||||| ||| |||||| ||||  ||| ||||||| ||||||||||||||| ||||||||| |||||||||    
T  882743 tcaaatttattgtttaactcacttt-tgcatgaatgtatccaaacataaatcattttaccttcaactcaattttaacta 882820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 20846414 - 20846463
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcacttttaactaaa 443  Q
    |||| ||| ||| ||||||||||||||||||| ||||| |||||||||||    
T  20846414 aaatgtattcaaacataaatcattttacattctactcatttttaactaaa 20846463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 37561448 - 37561519
Alignment:
Q  318 ttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattgttcaacccacttt 389  Q
    ||||| |||||| ||||||||||||||||||||| ||| ||||| ||||||| |||| |||||||| |||||    
T  37561448 ttgaaattagaatttgaagcttttgcctctacaattgaattttaacctcaaatttatcgttcaacctacttt 37561519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 37339364 - 37339315
Alignment:
Q  194 ttatgtttgttttcacttttggaggagtcaaaatttattctagaggtata 243  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||||||||    
T  37339364 ttatgtttgatttcacttttagaggggtcaaaatttattctagaggtata 37339315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 4451496 - 4451539
Alignment:
Q  346 ctacaaatgatttttagcctcaaagttattgttcaacccacttt 389  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  4451496 ctacaaatgatttttagcctcaaatttattgtttaacccacttt 4451539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Complemental strand, 17898126 - 17898085
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcacttt 435  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  17898126 aaatatatccaaacataaatcactttacattcaactcacttt 17898085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 39000612 - 39000531
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 480  Q
    ||||||| |||||||||||||  ||| | |||||||||||||||| || | | |||| |||||||||| | |||||||||||    
T  39000612 tatccaaacataaatcattttttattaagctcacttttaactaaactcaattctacaaaatcaattcaatcaaaatcaattt 39000531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 36150624 - 36150664
Alignment:
Q  398 atatccaatcataaatcattttacattcaactcacttttaa 438  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  36150624 atatccaaacataaatcactttacattcaactcacttttaa 36150664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 399 - 479
Target Start/End: Complemental strand, 38740367 - 38740287
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 479  Q
    ||||||| ||||||||| || |  ||||||||||||||| | ||| || | |||||| |||||||||||| ||||||||||    
T  38740367 tatccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaatcaatt 38740287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 408 - 480
Target Start/End: Original strand, 48575485 - 48575557
Alignment:
Q  408 ataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 480  Q
    ||||| |||||||||||||||||| ||||| | ||| || | |||||| |||||||||||| ||||| |||||    
T  48575485 ataaaccattttacattcaactcatttttatcaaaaatcaattttacaaaatcaattcattcaaaattaattt 48575557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 437
Target Start/End: Complemental strand, 29468706 - 29468588
Alignment:
Q  318 ttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattgttcaacccactttatgcaaatatatccaatcataaatcatt 417  Q
    |||||| ||||| |||||  | || ||||||||  ||||||||||||||||| || |  ||||||| ||||||   ||| ||||||||  |||||||| |    
T  29468706 ttgaagctagaaattgaaattgttccctctacacttgatttttagcctcaaacttgtc-ttcaaccgactttacataaacatatccaaatataaatcact 29468608  T
Q  418 ttacattcaactcactttta 437  Q
    |||||||||||||| |||||    
T  29468607 ttacattcaactcattttta 29468588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 2171747 - 2171809
Alignment:
Q  267 gtttggatgttctcgagtaaaattgaatttacctccggaatcaattctaatttgaagttagaa 329  Q
    |||||||||||||||||||||||||| ||| || |||||||  |||| || |||||| |||||    
T  2171747 gtttggatgttctcgagtaaaattgactttgcccccggaattgattcgaacttgaagctagaa 2171809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 362
Target Start/End: Original strand, 21592432 - 21592466
Alignment:
Q  328 aacttgaagcttttgcctctacaaatgatttttag 362  Q
    |||||||||||||||||||||||||| ||||||||    
T  21592432 aacttgaagcttttgcctctacaaataatttttag 21592466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 395 - 437
Target Start/End: Original strand, 33843799 - 33843841
Alignment:
Q  395 aatatatccaatcataaatcattttacattcaactcactttta 437  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||    
T  33843799 aatatatccaaacataaatcactttacatccaactcactttta 33843841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 410 - 480
Target Start/End: Original strand, 43868239 - 43868309
Alignment:
Q  410 aaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 480  Q
    |||||| ||||| ||||||| ||||||||||| | |  | |||||| |||||||||||| |||||||||||    
T  43868239 aaatcactttactttcaacttacttttaactagaattaattttacaaaatcaattcattcaaaatcaattt 43868309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 51093269 - 51093315
Alignment:
Q  319 tgaagttagaacttgaagcttttgcctctacaaatgatttttagcct 365  Q
    ||||| ||||| ||| ||||||||||||||||| |||||||||||||    
T  51093269 tgaagctagaatttggagcttttgcctctacaattgatttttagcct 51093315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 18597009 - 18597110
Alignment:
Q  277 tctcgagtaaaattgaatttacctccggaatcaattctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattg 376  Q
    |||| ||||||||||| ||||||||| ||||  ||||||| |||||| || || ||||| ||||||  |||| || ||||||| |   ||||||||||||    
T  18597009 tctcaagtaaaattgattttacctccagaattgattctaacttgaagctataatttgaaccttttgattctataattgattttaacattcaaagttattg 18597108  T
Q  377 tt 378  Q
    ||    
T  18597109 tt 18597110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 54487285 - 54487248
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcactttt 436  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  54487285 tatccaaacataaatcaatttacattcaactcactttt 54487248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 36413758 - 36413837
Alignment:
Q  310 attctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattgttcaacccacttt 389  Q
    ||||||| |||||||||||| |||||| ||||| |||||| | ||||||||||||||||| || |||| |||||| ||||    
T  36413758 attctaacttgaagttagaatttgaagtttttggctctacgattgatttttagcctcaaatttgttgtccaacccgcttt 36413837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 47307505 - 47307559
Alignment:
Q  414 cattttacattcaactcacttttaactaaagtcgactttacataatcaattcatt 468  Q
    ||||||||||||||||||||||||||||||||| | |||| | ||||||||||||    
T  47307505 cattttacattcaactcacttttaactaaagtcaattttataaaatcaattcatt 47307559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 29759711 - 29759751
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaac 439  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  29759711 tatccaaacataaatcattttacattcaactcacttttaac 29759751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 8381892 - 8381947
Alignment:
Q  208 acttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    |||| |||||||||||||||| |||||||||||||| || |||||| |||||||||    
T  8381892 acttctggaggagtcaaaattgattctagaggtataaaattgattttgacatgttt 8381947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 487
Target Start/End: Original strand, 12655241 - 12655424
Alignment:
Q  304 gaatcaattctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattgttcaacccactttatgcaaatatatcc 403  Q
    |||| |||||||| |||||| ||||| ||| ||| ||||  |||| | ||||| ||||  || ||  |||||||||||| |||||||    ||| ||||     
T  12655241 gaattaattctaacttgaagctagaatttgtagcatttgagtctaaatatgatctttactctaaagtttattgttcaactcactttacatgaatttatct 12655340  T
Q  404 aatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtcac 487  Q
    || |||| | |||| |||||||||||| ||||||| |||| || | || |||||||||||||||  |||||| |||| ||||||    
T  12655341 aaacatagaccattctacattcaactcgcttttaagtaaaatcaatttcacataatcaattcatctaaaatctatttttgtcac 12655424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 28024461 - 28024516
Alignment:
Q  310 attctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcct 365  Q
    |||||| ||||||||||||| |||||| ||||||||||| || |||||||||||||    
T  28024461 attctagtttgaagttagaaattgaagtttttgcctctaaaagtgatttttagcct 28024516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 399 - 465
Target Start/End: Original strand, 4347034 - 4347100
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattc 465  Q
    ||||||| ||||||||| ||||||||||||||||||||||| ||| || | | |||| |||||||||    
T  4347034 tatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaatcaattc 4347100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 402 - 479
Target Start/End: Original strand, 13344836 - 13344913
Alignment:
Q  402 ccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 479  Q
    |||| ||||||||| ||||| ||||||||||||||||| ||| || | | |||| |||||||||| | ||||||||||    
T  13344836 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattctacaaaatcaattcaatcaaaatcaatt 13344913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 7335937 - 7335901
Alignment:
Q  407 cataaatcattttacattcaactcacttttaactaaa 443  Q
    ||||||||| |||||||||||||||||||||||||||    
T  7335937 cataaatcactttacattcaactcacttttaactaaa 7335901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 41516883 - 41516939
Alignment:
Q  196 atgtttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatt 252  Q
    ||||||| || |||||||||||||||||||||  ||||||||||| ||||| |||||    
T  41516883 atgtttggttccacttttggaggagtcaaaatccattctagaggtgtagaattgatt 41516939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 394 - 477
Target Start/End: Complemental strand, 3887446 - 3887364
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaa 477  Q
    ||||| |||||| |||||| ||||||||||| ||||||| |||| ||||| || | |||||| || ||||||||| ||||||||    
T  3887446 aaatacatccaaacataaaacattttacattgaactcacctttatctaaaatc-attttacaaaaccaattcattcaaaatcaa 3887364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 24697680 - 24697602
Alignment:
Q  310 attctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattgttcaacccacttt 389  Q
    ||||||| ||||| |||||| ||||||||||||||||| ||| |||| ||||| ||| || ||| |||||||| ||||||    
T  24697680 attctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttagtctccaattta-tgttcaactcacttt 24697602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 394 - 437
Target Start/End: Complemental strand, 47978432 - 47978389
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcactttta 437  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||    
T  47978432 aaatacatccaaccataaatcactttacattcaactcactttta 47978389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 32365134 - 32365183
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcacttttaactaaa 443  Q
    |||||| | ||| ||||||||| |||||||||||||||||||| ||||||    
T  32365134 aaatatgttcaaacataaatcaatttacattcaactcacttttgactaaa 32365183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 398 - 439
Target Start/End: Original strand, 40352450 - 40352491
Alignment:
Q  398 atatccaatcataaatcattttacattcaactcacttttaac 439  Q
    |||||||| ||||||||| |||||||| ||||||||||||||    
T  40352450 atatccaaacataaatcactttacattaaactcacttttaac 40352491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 41516990 - 41517043
Alignment:
Q  310 attctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagc 363  Q
    ||||||| |||||||||||| ||| || |||||||||| ||| |||||||||||    
T  41516990 attctaacttgaagttagaatttggagtttttgcctcttcaattgatttttagc 41517043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 353 - 441
Target Start/End: Original strand, 48832935 - 48833024
Alignment:
Q  353 tgatttttagcctcaaagttattgttcaacccac-tttatgcaaatatatccaatcataaatcattttacattcaactcacttttaacta 441  Q
    |||||||||  |||||| ||||| || ||| ||| ||||||  ||||||||| | |||||| || || ||||||||||||||||||||||    
T  48832935 tgatttttacactcaaatttattattgaactcacgtttatgtgaatatatccgaacataaaccacttaacattcaactcacttttaacta 48833024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 52013664 - 52013623
Alignment:
Q  198 gtttgttttcacttttggaggagtcaaaatttattctagagg 239  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||    
T  52013664 gtttggtttcacttttggaggagccaaaattaattctagagg 52013623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 389
Target Start/End: Original strand, 11510913 - 11511034
Alignment:
Q  267 gtttggatgttctcgagtaaaattgaatttacctccggaatcaattctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctc 366  Q
    ||||||||||| ||||||| |||||| ||| |||||  | |  ||||||  |||||| ||||| ||| || |||||||||||||| | ||||| | ||||    
T  11510913 gtttggatgttttcgagtagaattgattttgcctccatatttgattctatcttgaagctagaatttggagtttttgcctctacaatttattttaa-cctc 11511011  T
Q  367 aaagttattgttcaacccacttt 389  Q
    ||| |||||||||||||||||||    
T  11511012 aaatttattgttcaacccacttt 11511034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 16013888 - 16013831
Alignment:
Q  208 acttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgtttcg 265  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||||  ||||||||||    
T  16013888 acttttggaggagccaaaatttattctagaggtgtagaattgattttaacatgtttcg 16013831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 37649652 - 37649596
Alignment:
Q  207 cacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    |||||||||||||||||||||| ||||| ||||||| ||| |||||| |||||||||    
T  37649652 cacttttggaggagtcaaaattgattcttgaggtatggaattgattttgacatgttt 37649596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 437
Target Start/End: Original strand, 10918605 - 10918686
Alignment:
Q  357 ttttagcctcaaagttattgttcaacccacttt-atgcaaatatatccaatcataaatcattttacattcaactcactttta 437  Q
    ||||||||| ||| |||||||  || ||||||| |  |||||| |||||| ||||||||| |||||||||||||||||||||    
T  10918605 ttttagccttaaatttattgtcaaatccacttttacacaaatacatccaaacataaatcactttacattcaactcactttta 10918686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 11005755 - 11005710
Alignment:
Q  398 atatccaatcataaatcattttacattcaactcacttttaactaaa 443  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||    
T  11005755 atatccaaacataaatcattttacattcaagtcactattaactaaa 11005710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 12110919 - 12111000
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 480  Q
    ||||||| ||||||||| |||| |||||||||||||||||| ||| || | || ||| |||||||||  | |||||||||||    
T  12110919 tatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattt 12111000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 31224720 - 31224769
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcacttttaactaaa 443  Q
    |||||||||||| ||||||||| || |||| |||||||||||||||||||    
T  31224720 aaatatatccaaacataaatcaattcacatccaactcacttttaactaaa 31224769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 43717240 - 43717305
Alignment:
Q  198 gtttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    ||||| ||||||||||||||| || |||||| |||||||| || ||||| |||||| |||||||||    
T  43717240 gtttggtttcacttttggaggtgttaaaattgattctagatgtgtagaattgattttgacatgttt 43717305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 434
Target Start/End: Original strand, 44439256 - 44439381
Alignment:
Q  310 attctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattgttcaacccac-tttatgcaaatatatccaatca 408  Q
    ||||||| |||||| || || ||| ||||||||  |||| || ||||||| |  |||||| |||||||||||| ||| ||||   ||| |||||||| ||    
T  44439256 attctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaaca 44439355  T
Q  409 taaatcattttacattcaactcactt 434  Q
    ||||||| |||||||| |||||||||    
T  44439356 taaatcactttacatttaactcactt 44439381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 410 - 466
Target Start/End: Complemental strand, 3716627 - 3716571
Alignment:
Q  410 aaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattca 466  Q
    |||||||||||| ||||||||| ||||||||||| |  |||||| ||||||||||||    
T  3716627 aaatcattttaccttcaactcatttttaactaaaataaactttagataatcaattca 3716571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 7629757 - 7629825
Alignment:
Q  195 tatgtttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    |||||||| || |||||||||||||| ||| ||| ||||||||||| ||||| |||||| | |||||||    
T  7629757 tatgtttggttccacttttggaggagccaagattgattctagaggtgtagaattgattttgtcatgttt 7629825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 23359993 - 23359953
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaac 439  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  23359993 tatccaaacataaatcactttacattcaactcacttttaac 23359953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 1977050 - 1976987
Alignment:
Q  200 ttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    |||||| |||||||||||||| ||||||| ||||||||||| |  || |||||| |||||||||    
T  1977050 ttgtttccacttttggaggagccaaaattgattctagaggtttgaaattgattttgacatgttt 1976987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 399 - 438
Target Start/End: Original strand, 3853945 - 3853984
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaa 438  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  3853945 tatccaaacataaatcaatttacattcaactcacttttaa 3853984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 40704682 - 40704753
Alignment:
Q  409 taaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 480  Q
    ||||||| ||||||||||| | | ||||||| ||| || | || |||||||||||||||| |||||||||||    
T  40704682 taaatcaatttacattcaaataaattttaaccaaaatcaatttcacataatcaattcattcaaaatcaattt 40704753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 15220854 - 15220817
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcactttt 436  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  15220854 tatccaaacataaatcactttacattcaactcactttt 15220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 277 - 437
Target Start/End: Original strand, 27571832 - 27571992
Alignment:
Q  277 tctcgagtaaaattgaatttacctccggaatcaattctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattg 376  Q
    ||||||||| |||||| ||||||||  ||||  |||||| || |||||||||| ||| ||||||||  |||| || ||||||| |  |||||  |||||     
T  27571832 tctcgagtataattgattttacctcaagaattgattctactt-gaagttagaaattggagcttttgattctagaattgattttaacactcaagtttatta 27571930  T
Q  377 ttcaacccac-tttatgcaaatatatccaatcataaatcattttacattcaactcactttta 437  Q
    |||||| ||| ||||   |||| ||||||| ||||||||||||||| || ||||||||||||    
T  27571931 ttcaactcacatttacataaatgtatccaaccataaatcattttacctttaactcactttta 27571992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 26975341 - 26975305
Alignment:
Q  407 cataaatcattttacattcaactcacttttaactaaa 443  Q
    |||||||||||||||||||||||||||| ||||||||    
T  26975341 cataaatcattttacattcaactcacttataactaaa 26975305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 407 - 479
Target Start/End: Complemental strand, 42481875 - 42481803
Alignment:
Q  407 cataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 479  Q
    ||||||||||||||||||||||||||||||    | | || | ||||||||||||||||| | ||||||||||    
T  42481875 cataaatcattttacattcaactcactttttttcagaatcaattttacataatcaattcacttaaaatcaatt 42481803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 399 - 478
Target Start/End: Complemental strand, 15311268 - 15311189
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaat 478  Q
    ||||||| ||||||||| | ||||||||||||||||||||| | | || | |||||| ||||||||  || |||||||||    
T  15311268 tatccaaacataaatcactatacattcaactcacttttaaccatattcaattttacacaatcaattagttcaaaatcaat 15311189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 34439901 - 34439947
Alignment:
Q  314 taatttgaagttagaacttgaagcttttgcctctacaaatgattttt 360  Q
    ||||||||||||| || |||||||||||||||| ||||||| |||||    
T  34439901 taatttgaagttaaaatttgaagcttttgcctcaacaaatggttttt 34439947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 38123836 - 38123770
Alignment:
Q  197 tgtttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    |||||| || |||||||||||||| ||||||| ||||||||| | ||||| ||||||  ||||||||    
T  38123836 tgtttggttccacttttggaggagccaaaattgattctagagatgtagaattgattttaacatgttt 38123770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 407 - 436
Target Start/End: Complemental strand, 18350149 - 18350120
Alignment:
Q  407 cataaatcattttacattcaactcactttt 436  Q
    ||||||||||||||||||||||||||||||    
T  18350149 cataaatcattttacattcaactcactttt 18350120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 389
Target Start/End: Complemental strand, 21436119 - 21436002
Alignment:
Q  273 atgttctcgagtaaaattgaatttacctccggaatcaattctaatttgaagttagaactt-gaagcttttgcctctacaaatgatttttagcctcaaagt 371  Q
    ||||||||||||| |||| | ||||||||  ||||  ||| ||| |||||| ||||| || | ||||||||||||||| | ||| ||||||  |  ||||    
T  21436119 atgttctcgagtagaatttattttacctcgagaattgattttaacttgaagctagaattttggagcttttgcctctaccattgaattttaggtttgaagt 21436020  T
Q  372 tattgttcaacccacttt 389  Q
    |||||||||| |||||||    
T  21436019 tattgttcaatccacttt 21436002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 38230120 - 38230165
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcacttttaac 439  Q
    |||| ||||||| ||||||||| || ||||||||||||||||||||    
T  38230120 aaatgtatccaaacataaatcaattcacattcaactcacttttaac 38230165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 15322 - 15241
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 480  Q
    ||||||| ||||||||| |||| |||||||||||||||||| ||| || | || ||| |||||||||  | |||||||||||    
T  15322 tatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattt 15241  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 439
Target Start/End: Original strand, 14930089 - 14930262
Alignment:
Q  267 gtttggatgttctcgagtaaaattgaatttacctccggaatcaattctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctc 366  Q
    ||||| ||||||| ||||| |||||  ||| |||||||||| | |||| | |||||| |   | ||| ||||||| |||| | | ||  |||||| | ||    
T  14930089 gtttgaatgttctagagtataattgcttttgcctccggaatgagttctgacttgaagctgagatttgtagctttttcctccaaacatattttttatcttc 14930188  T
Q  367 aaagttattgttcaacccact-ttatgcaaatatatccaatcataaatcattttacattcaactcacttttaac 439  Q
    ||| ||||| |||||| |||| ||||   |||||||||||||||| |||| ||||||||||||| |||||||||    
T  14930189 aaatttatttttcaactcactattatttgaatatatccaatcatagatcactttacattcaacttacttttaac 14930262  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 11038081 - 11038145
Alignment:
Q  199 tttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    |||||||| |||||| || ||| ||||||| |||||||||||||| || |||||| |||||||||    
T  11038081 tttgttttaactttttgacgagacaaaattgattctagaggtatataattgattttgacatgttt 11038145  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 19649230 - 19649270
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaac 439  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  19649230 tatccaaacataaatcactttacattcaactcacttttaac 19649270  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 39648335 - 39648267
Alignment:
Q  195 tatgtttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    |||||||| || ||||||| |||||||||||||| ||||||||| | || || |||||| |||||||||    
T  39648335 tatgtttggttacacttttagaggagtcaaaattgattctagagatgtataattgattttgacatgttt 39648267  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 8916905 - 8916851
Alignment:
Q  205 ttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacat 259  Q
    |||||||||||||||||||||||| |||||||| | ||| || |||||| |||||    
T  8916905 ttcacttttggaggagtcaaaattgattctagaagcatacaattgattttgacat 8916851  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 32767278 - 32767348
Alignment:
Q  195 tatgtttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgtttcg 265  Q
    |||||||| | |||| |||||  ||| ||||||| ||||||||| ||||||| |||||| |||||||||||    
T  32767278 tatgtttggtgtcacgtttgggagagccaaaattgattctagagatatagaattgattttgacatgtttcg 32767348  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 43123157 - 43123206
Alignment:
Q  338 ttttgcctctacaaatgatttttagcctcaaagttattgttcaacccactt 388  Q
    |||||||||||||| || |||||||||||||| ||| ||||||||||||||    
T  43123157 ttttgcctctacaattg-tttttagcctcaaatttactgttcaacccactt 43123206  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 3467572 - 3467617
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcacttttaac 439  Q
    |||||||||||| || |||||| || ||||||||||||||||||||    
T  3467572 aaatatatccaaacagaaatcaattcacattcaactcacttttaac 3467617  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 410 - 479
Target Start/End: Original strand, 18123329 - 18123398
Alignment:
Q  410 aaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 479  Q
    |||||||||||| ||||| |||||||||  || |||||| ||||||| ||||||||| |  |||||||||    
T  18123329 aaatcattttaccttcaattcacttttagttagagtcgattttacatcatcaattcactctaaatcaatt 18123398  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 29970846 - 29970927
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 480  Q
    ||||||| ||||||||| |||| | |||||||||||||||||||| || | | |||| | |||||||  | |||||||||||    
T  29970846 tatccaaacataaatcactttaaactcaactcacttttaactaaaatcaattatacaaattcaattctatcaaaatcaattt 29970927  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000007; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 2483776 - 2483732
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaactaaa 443  Q
    ||||||| ||||||||| || ||||||||||||||||||||||||    
T  2483776 tatccaaacataaatcaattcacattcaactcacttttaactaaa 2483732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 3043182 - 3043126
Alignment:
Q  207 cacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgttt 263  Q
    ||||| ||||||| |||||||| ||||||||||| ||||| |||||| |||||||||    
T  3043182 cacttatggaggaatcaaaattgattctagaggtgtagaattgattttgacatgttt 3043126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 310 - 378
Target Start/End: Complemental strand, 10859921 - 10859853
Alignment:
Q  310 attctaatttgaagttagaacttgaagcttttgcctctacaaatgatttttagcctcaaagttattgtt 378  Q
    ||||||| |||||| ||||| ||| |||||||||||| |||  ||||||||| ||||||| ||||||||    
T  10859921 attctaacttgaagctagaatttggagcttttgcctcaacatttgatttttaacctcaaatttattgtt 10859853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 22811076 - 22811116
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaac 439  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  22811076 tatccaaacataaatcactttacattcaactcacttttaac 22811116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 400 - 443
Target Start/End: Complemental strand, 2868414 - 2868371
Alignment:
Q  400 atccaatcataaatcattttacattcaactcacttttaactaaa 443  Q
    |||||| | ||||||| |||||||||||||||||||||||||||    
T  2868414 atccaaacttaaatcactttacattcaactcacttttaactaaa 2868371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 394 - 464
Target Start/End: Complemental strand, 5465468 - 5465398
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaatt 464  Q
    ||||| ||| || ||||||||||||| ||||||| ||||||||| ||||| || | |||||| ||||||||    
T  5465468 aaatacatctaaacataaatcatttttcattcaattcacttttatctaaaatcaattttacaaaatcaatt 5465398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 394 - 464
Target Start/End: Original strand, 6988207 - 6988277
Alignment:
Q  394 aaatatatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaatt 464  Q
    ||||| ||| || |||||||||||||| |||||||| |||||||| |||| || | |||||| ||||||||    
T  6988207 aaatacatctaaacataaatcattttaaattcaacttacttttaattaaaatcaattttacaaaatcaatt 6988277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 15368138 - 15368204
Alignment:
Q  195 tatgtttgttttcacttttggaggagtcaaaatttattctagaggtatagaactgatttagacatgt 261  Q
    |||||||| || |||||||||||||| ||||||| ||||||||  | ||||| |||||| |||||||    
T  15368138 tatgtttggttccacttttggaggagccaaaattgattctagatatgtagaattgattttgacatgt 15368204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 398 - 436
Target Start/End: Original strand, 24036622 - 24036660
Alignment:
Q  398 atatccaatcataaatcattttacattcaactcactttt 436  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  24036622 atattcaaacataaatcattttacattcaactcactttt 24036660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 621356 - 621291
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaatt 464  Q
    ||||||||||||||||| |||| |||||||| | ||||||| ||| || | |||||| ||||||||    
T  621356 tatccaatcataaatcactttaaattcaactgaattttaaccaaaatcaattttacaaaatcaatt 621291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 371 - 443
Target Start/End: Complemental strand, 28304894 - 28304821
Alignment:
Q  371 ttattgttcaacccact-ttatgcaaatatatccaatcataaatcattttacattcaactcacttttaactaaa 443  Q
    |||| |||||||||||| ||| |  |||||||||||  |||||||||||  ||||||||||| |||||||||||    
T  28304894 ttatagttcaacccactgttacgtgaatatatccaaatataaatcatttcccattcaactcatttttaactaaa 28304821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 29794136 - 29794095
Alignment:
Q  195 tatgtttgttttcacttttggaggagtcaaaatttattctag 236  Q
    |||||||| |||| |||||| |||||||||||||||||||||    
T  29794136 tatgtttggtttctcttttgaaggagtcaaaatttattctag 29794095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 29922992 - 29923069
Alignment:
Q  399 tatccaatcataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatca 476  Q
    ||||||| ||||||| | || ||||||||||||||| ||   ||| || | ||||||||||||||||||| |||||||    
T  29922992 tatccaaacataaattacttcacattcaactcacttatagtcaaaatcaattttacataatcaattcattcaaaatca 29923069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 12499 - 12465
Alignment:
Q  194 ttatgtttgttttcacttttggaggagtcaaaatt 228  Q
    ||||||||| |||||||||||||||||||||||||    
T  12499 ttatgtttgatttcacttttggaggagtcaaaatt 12465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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