View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12086_low_10 (Length: 408)

Name: NF12086_low_10
Description: NF12086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12086_low_10
NF12086_low_10
[»] chr4 (2 HSPs)
chr4 (11-408)||(26990437-26990835)
chr4 (14-234)||(27004980-27005206)
[»] chr1 (1 HSPs)
chr1 (236-288)||(31294349-31294401)


Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Original strand, 26990437 - 26990835
Alignment:
Q  11 aagcaaaggcggtgcaataaatcctaaaagttatgtgtgcataaagtcatggatgtgaatacataacaataatgccaaaaaatttactggtcttctg-gt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26990437 aagcaaaggcggtgcaataaatcctaaaagttatgtgtgcataaagtcatggatgtgaatacataacaataatgccaaaaaatttactggtcttctgcgt 26990536  T
Q  110 gtatacagaatttcattgtaagaatacatgcacctaatcatgcattgctttaaatattggcctctgcttctgtcattgctgggtgtatacaggtttgttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  26990537 gtatacagaatttcattgtaagaatacatgcacctaatcatgcattgctttaaatattggcctctgcttttgtcattgttgggtgtatacaggtttgttg 26990636  T
Q  210 atgtgtcaagtgtgagttcaaagtcccacttgtgtggttgctcttagtccaatgtgatggtccgccccattgttttaggctcatggaagtgccaccaagg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26990637 atgtgtcaagtgtgagttcaaagtcccacttgtgtggttgctcttagtccaatgcgatggtccgccccattgttttaggctcatggaagtgccaccaagg 26990736  T
Q  310 tcacactcacannnnnnnatataattgtcatttgatcatttcctagtcaatagaaggctaaccactcacatgaattctaacaatcttcccaacaattgt 408  Q
    |||||||||||       |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26990737 tcacactcacatttttttatataattgtcatttgatcatttcctagtcaatataaggctaaccactcacatgaattctaacaatcttcccaacaattgt 26990835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 27004980 - 27005206
Alignment:
Q  14 caaaggcggtgcaataaatcctaaaagttatgtgtgcataaagtcatggatgtgaatacataac-aataatgccaaaa-aatttactggtcttctg-gtg 110  Q
    ||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| |||||  |||||| | ||||||||||||||| |||    
T  27004980 caaaggcagtgcaataaatcctaaaagttctgtgcgcataaagtcatggatgtg-atacataacaaataacaccaaaatagtttactggtcttctgtgtg 27005078  T
Q  111 tatacagaatttcattgtaagaatacatgca----cctaatcatgcattgctttaaatattggcctctgcttctgtcattgctgggtgtatacaggtttg 206  Q
    |||||| |||||||| |||||| ||| ||||    |||| |||| |||||||| | |||||  |||| ||||||||||||| |||||||||| |||| ||    
T  27005079 tatacacaatttcatagtaagagtacgtgcaccctcctactcatacattgcttcagatattatcctccgcttctgtcattgttgggtgtatataggtctg 27005178  T
Q  207 ttgatgtgtcaagtgtgagttcaaagtc 234  Q
    ||  ||||| |||||||| |||||||||    
T  27005179 ttcgtgtgttaagtgtgaattcaaagtc 27005206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 31294349 - 31294401
Alignment:
Q  236 cacttgtgtggttgctcttagtccaatgtgatggtccgccccattgttttagg 288  Q
    ||||||||||||||||||| ||||||||||||| |||  |||| |||||||||    
T  31294349 cacttgtgtggttgctcttggtccaatgtgatgatccaacccagtgttttagg 31294401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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