View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12086_low_13 (Length: 355)
Name: NF12086_low_13
Description: NF12086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12086_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 26991281 - 26990956
Alignment:
| Q |
19 |
atgagcaggtcctgctactgttttttgtgattatttgggctactcttttatgtttctgtcgattgctacttcgaatatggttgctactgcccttgctaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991281 |
atgagcaggtcctgctactgttttttgtgattatttgggctactcttttatgtttctgtcgattgctacttcgaatatggttgctactgcccttgctaaa |
26991182 |
T |
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| Q |
119 |
caggtttgnnnnnnnattcgcatatagaaaattttgatgaatgtgtttgtgaatgggtatcttgtattcaaatgtgagtggttagtctcacaccggttga |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991181 |
caggtttgtttttt-attcgcatatagaaaattttgatgaatgtgtttgtgaatgggtatcttgtattcaaatgtgagtggttagtctcacaccggttga |
26991083 |
T |
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| Q |
219 |
ggatgagccaaactaatgatatagaataaagataattcatatggctaatgatcttaggttttgggtggaaatgtagtgttttggtctttgtagttcatga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991082 |
ggatgagccaaactaatgatatagaataaagataattcatatggctaatgatcttaggttttgggtggaaatgtagtgttttggtctttgtagttcatga |
26990983 |
T |
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| Q |
319 |
ttggttaccttattgttgctccctatg |
345 |
Q |
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||||||||||||||||||||||||||| |
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| T |
26990982 |
ttggttaccttattgttgctccctatg |
26990956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 27005727 - 27005620
Alignment:
| Q |
19 |
atgagcaggtcctgctactgttttttgtgattatttgggctactcttttatgtttctgtcgattgctacttcgaatatggttgctactgcccttgctaaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27005727 |
atgagcaggtcctgctactgttttttgtgattatttgggttactcttttatgtttctgtcgattgccacttcgaatatggttgctactgcccttgctaag |
27005628 |
T |
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| Q |
119 |
caggtttg |
126 |
Q |
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|||||||| |
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| T |
27005627 |
caggtttg |
27005620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 26976178 - 26976283
Alignment:
| Q |
19 |
atgagcaggtcctgctactgttttttgtgattatttgggctactcttttatgtttctgtcgattgctacttcgaatatggttgctactgcccttgctaaa |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26976178 |
atgagcaggtcctgctactgttttttgcgattatttgggctacttgtttatgtttttgtcgattgctacttcgaatatggttgctactgcacttgctaaa |
26976277 |
T |
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| Q |
119 |
caggtt |
124 |
Q |
| |
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|||||| |
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| T |
26976278 |
caggtt |
26976283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 144 - 299
Target Start/End: Complemental strand, 27005591 - 27005434
Alignment:
| Q |
144 |
agaaaattttgatgaatgtg--tttgtgaatgggtatcttgtattcaaatgtgagtggttagtctcacaccggttgaggatgagccaaactaatgatata |
241 |
Q |
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||||||| ||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| ||| || |||||||||||||| |
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| T |
27005591 |
agaaaatattgatgaatatgcatttgtgaacgggtagcttgtattcaaatgtgagtggttagtctcacactagttgagaatgggctaaactaatgatata |
27005492 |
T |
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| Q |
242 |
gaataaagataattcatatggctaatgatcttaggttttgggtggaaatgtagtgttt |
299 |
Q |
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||| | |||| |||||||||| ||||| ||| ||||||| ||||||||||| |||||| |
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| T |
27005491 |
gaagagagatgattcatatgggtaatgctctaaggtttttggtggaaatgtggtgttt |
27005434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 26946347 - 26946246
Alignment:
| Q |
23 |
gcaggtcctgctactgttttttgtgattatttgggctactcttttatgtttctgtcgattgctacttcgaatatggttgctactgcccttgctaaacagg |
122 |
Q |
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|||||||||||||||||| |||||||||| || |||| || |||||||| || |||||||||| |||||||||||||||||||| |||||||||| |
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| T |
26946347 |
gcaggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
26946248 |
T |
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| Q |
123 |
tt |
124 |
Q |
| |
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|| |
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| T |
26946247 |
tt |
26946246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 26953902 - 26953846
Alignment:
| Q |
68 |
atgtttctgtcgattgctacttcgaatatggttgctactgcccttgctaaacaggtt |
124 |
Q |
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||||||||||| ||| ||| || ||||| |||||||||||||||||||||||||| |
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| T |
26953902 |
atgtttctgtcagttgttacatccaatataattgctactgcccttgctaaacaggtt |
26953846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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