View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12086_low_15 (Length: 283)
Name: NF12086_low_15
Description: NF12086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12086_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 267
Target Start/End: Complemental strand, 48089268 - 48089007
Alignment:
| Q |
6 |
agaagcaaaggccacccctatcattccaccgtagaatactacccaaccccacacctctccttgagaactacaacaaataattacaggaaaacactgtaag |
105 |
Q |
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| T |
48089268 |
agaaccaaaagccacccctatcattccaccgtagaatactacccaaccccacacctctccttgagaactacaacaaataattacaggcaaacactgtaag |
48089169 |
T |
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| Q |
106 |
cattagacagtaataatttgtggctagtaattacaactagttaatataataataggatcgatcaaaaccttatgttgaagaaacttccatccagagcaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48089168 |
cattagacagtaataatttgtggctagtaattacaactagttaatataataataggatcgatcaaaaccttatgttgaagaaacttccatccagagcaaa |
48089069 |
T |
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| Q |
206 |
aacaaagcctaaaacacccacaactaaaaatgggaaatttgtcatcacattcaatgtgtttg |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48089068 |
aacaaagcctaaaacacccacaactaaaaatgggaaatttgtcatcacattcaatgtgtttg |
48089007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 4202781 - 4202830
Alignment:
| Q |
218 |
aacacccacaactaaaaatgggaaatttgtcatcacattcaatgtgtttg |
267 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
4202781 |
aacacccacaactaaaaatggaaaatttgtgatcacattcaatgtgtttg |
4202830 |
T |
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