View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12086_low_2 (Length: 794)

Name: NF12086_low_2
Description: NF12086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12086_low_2
NF12086_low_2
[»] chr4 (8 HSPs)
chr4 (18-783)||(36508873-36509625)
chr4 (615-678)||(37337331-37337401)
chr4 (181-272)||(35157929-35158020)
chr4 (181-247)||(24613634-24613700)
chr4 (181-257)||(23292930-23293006)
chr4 (194-272)||(40179593-40179671)
chr4 (182-272)||(49431050-49431140)
chr4 (199-248)||(30982829-30982878)
[»] chr7 (3 HSPs)
chr7 (192-259)||(5835284-5835351)
chr7 (181-272)||(598232-598323)
chr7 (176-259)||(21880189-21880272)
[»] chr5 (7 HSPs)
chr5 (181-272)||(28588618-28588709)
chr5 (176-272)||(42893384-42893480)
chr5 (196-259)||(26312806-26312869)
chr5 (181-272)||(43564905-43564996)
chr5 (222-272)||(18421826-18421876)
chr5 (181-272)||(21576689-21576780)
chr5 (177-259)||(30098978-30099060)
[»] chr3 (4 HSPs)
chr3 (181-272)||(35222962-35223053)
chr3 (181-272)||(40993279-40993370)
chr3 (219-259)||(2941595-2941635)
chr3 (181-272)||(55401099-55401190)
[»] chr1 (7 HSPs)
chr1 (181-272)||(40258877-40258968)
chr1 (192-272)||(29163336-29163416)
chr1 (182-272)||(5898211-5898301)
chr1 (182-272)||(26830612-26830701)
chr1 (175-272)||(38078599-38078696)
chr1 (181-249)||(32461397-32461465)
chr1 (181-259)||(37598868-37598946)
[»] chr6 (6 HSPs)
chr6 (219-272)||(33001271-33001324)
chr6 (176-272)||(34595158-34595254)
chr6 (175-272)||(7378003-7378100)
chr6 (220-261)||(30851635-30851676)
chr6 (201-272)||(9658903-9658974)
chr6 (206-259)||(7740678-7740731)
[»] chr2 (5 HSPs)
chr2 (197-272)||(20242687-20242762)
chr2 (174-272)||(37559001-37559099)
chr2 (181-270)||(18840957-18841046)
chr2 (193-272)||(30404806-30404885)
chr2 (181-259)||(28596506-28596584)
[»] scaffold0050 (1 HSPs)
scaffold0050 (197-259)||(70315-70377)
[»] chr8 (7 HSPs)
chr8 (196-262)||(126306-126372)
chr8 (181-259)||(3951480-3951558)
chr8 (196-272)||(14134723-14134799)
chr8 (207-259)||(33405354-33405406)
chr8 (181-259)||(926732-926810)
chr8 (181-247)||(29447043-29447109)
chr8 (199-272)||(31557020-31557093)
[»] scaffold0008 (1 HSPs)
scaffold0008 (196-248)||(263320-263372)
[»] scaffold0003 (1 HSPs)
scaffold0003 (176-236)||(241665-241725)


Alignment Details
Target: chr4 (Bit Score: 634; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 18 - 783
Target Start/End: Original strand, 36508873 - 36509625
Alignment:
Q  18 cttactatggcattcttcaaatactcctctgactttggaacattcccagaagcaaaccattttgcttcttgcaagaaagcattcaagagtcttacccact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36508873 cttactatggcattcttcaaatactcctctgactttggaacattcccagaagcaaaccattttgcttcttgcaagaaagcattcaagagtcttacccact 36508972  T
Q  118 gtaattaattaacaaccaaattaatcacaattaattaagtagaagataacatgatagttctacgaagcatggatacttctcggattaagcgtgtcctggt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  36508973 gtaattaattaacaaccaaattaatcacaattaattaagtagaagataacatgatagttctatgaagcatgaatacttctcggattaaacgtgtcctggt 36509072  T
Q  218 atcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtgannnnnnnnncttcaaattatttgcggtatcgacatgtcagtgtct 317  Q
    ||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||          |||||||||||||||||||||||||||||||||||    
T  36509073 atcagacacgtgtcgcgtccgacgccgacacatataattacacttgattatgtgattttttt---ttcaaattatttgcggtatcgacatgtcagtgtct 36509169  T
Q  318 ccggtatccatgcttcatagcatgatacacataagattagaactactgaagatttagaatgaagggtataccgattttattaatgaggttaaaggattcc 417  Q
    ||||||||| |||||         |||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36509170 ccggtatccgtgctt---------atacacataagactagatctactgaagatttagaat-aagggtataccgattttattaatgaggttaaaggattcc 36509259  T
Q  418 atccatgtttgatgtatgtcctaagagcaaattcattagttatgtcataaagagccttgaaacacactttcatgcagtctggtaattgttcaatagctga 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36509260 atccatgtttgatgtatgtcctaagagcaaattcattagttatgtcataaagagccttgaaacacactttcatgcagtctggtaattgttcaatagctga 36509359  T
Q  518 caagtcccatctgagttcaaacaaaagaatacttaagnnnnnnnttactagtatggtttaattttatttgagtgaggattcacataattacctcttaaca 617  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36509360 caagtcccatctgagttcaaacaaaagaatacttaagaaaaaaattactagtatggtttaattttatttgagtgaggattcacataattacctcttaaca 36509459  T
Q  618 gcatctgtaaagagagtaagttcatcaatgtttccataaaaatcaaatatatcatcaatgatgtaaattagggatagaggctttgtgagctcaatccgtt 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36509460 gcatctgtaaagagagtaagttcatcaatgtttccataaaaatcaaatatatcatcaatgatgtaaattagggatagaggctttgtgagctcaatccgtt 36509559  T
Q  718 cttcagagaattgtggatctgggagacatgccattgaccacgagtaccatttaattggttcatctc 783  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36509560 cttcagagaattgtggatctgggagacatgccattgaccacgagtaccatttaattggttcatctc 36509625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 615 - 678
Target Start/End: Original strand, 37337331 - 37337401
Alignment:
Q  615 acagcatctgtaaagagagtaagt-------tcatcaatgtttccataaaaatcaaatatatcatcaatga 678  Q
    ||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||| |||||||    
T  37337331 acagcatctgtaaagagagtaagttcatcaatcatcaatgtttccatacaaatcaaatatatcgtcaatga 37337401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 35157929 - 35158020
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||| ||| |||||||||||||||||||| | ||| |  |||| |||||||||| ||| ||||||| |||||||||| |  |||||||||    
T  35157929 gaagcacggacacttctcggattaagcgtgttccggtgttggacatgtgtcgtgtcagacaccgacacttataattacactaaattatgtga 35158020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 24613634 - 24613700
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgaca 247  Q
    |||||| ||| ||| || ||||||  ||||||||||| |||||||||||||||||||||| ||||||    
T  24613634 gaagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgaca 24613700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 23292930 - 23293006
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataatta 257  Q
    |||||| ||| ||| ||||||||| |||||||| ||| || ||||||||||||||| ||| ||||||| | ||||||    
T  23292930 gaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaatta 23293006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 40179593 - 40179671
Alignment:
Q  194 ttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    ||||||||||| ||||||| |||| ||  ||| |||||||||| ||| ||||| |||||||||||| |  |||||||||    
T  40179593 ttctcggattaggcgtgtcatggtgtcgaacatgtgtcgtgtccgacaccgacgcatataattacactgaattatgtga 40179671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 49431140 - 49431050
Alignment:
Q  182 aagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    ||||||||| ||| ||||||| | |||||||| ||| |  ||||||||||||||| ||| ||||||| | |||||||| |  |||||||||    
T  49431140 aagcatggacactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaattatgtga 49431050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 30982829 - 30982878
Alignment:
Q  199 ggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacac 248  Q
    |||||| |||||||| ||| || ||||||||||||||||||| |||||||    
T  30982829 ggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 30982878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 5835351 - 5835284
Alignment:
Q  192 acttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattaca 259  Q
    |||||||||||||||||||||| |||||||||||| |||| |||||||| ||||||||||||||||||    
T  5835351 acttctcggattaagcgtgtcccggtatcagacacatgtcatgtctgacaccgacacatataattaca 5835284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 598323 - 598232
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||| ||| ||||||||||||| |||||||| ||| || ||||||||||||||||||| ||||||| || |||||||||| |||| ||||    
T  598323 gaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattacatttaattacgtga 598232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 21880272 - 21880189
Alignment:
Q  176 tctacgaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattaca 259  Q
    |||| |||||| ||| ||||||||||||| |||||||||||| || |||| |||||||||| ||| ||||||| | ||||||||    
T  21880272 tctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattaca 21880189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 28588618 - 28588709
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||||||| |||  ||||||||||||||||||||| ||||| | |||||||||| ||| ||||||| |||||||||| |  |||||||||    
T  28588618 gaagcatggacactcttcggattaagcgtgtcctggtgtcagatatgtgtcgtgtccgacaccgacacctataattacactgaattatgtga 28588709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 42893480 - 42893384
Alignment:
Q  176 tctacgaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||| |||||||||| ||| |||  |||| |||||||||||| || ||||||||| ||||||||| ||||||| | |||||||| | ||||||||||    
T  42893480 tctatgaagcatggacactcctcatattaggcgtgtcctggtgtcggacacgtgttgtgtctgacaccgacacttgtaattacactggattatgtga 42893384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 26312869 - 26312806
Alignment:
Q  196 ctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattaca 259  Q
    ||||||||| | |||||||||| |||||||||| ||||||| ||| |||| |||||||||||||    
T  26312869 ctcggattaggtgtgtcctggtgtcagacacgtatcgtgtccgacaccgatacatataattaca 26312806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 43564996 - 43564905
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||| ||| ||||||||||||| |||||||| ||  || ||||| ||||||||| ||| ||||||| |||||||||| |  |||||||||    
T  43564996 gaagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttataattacactaaattatgtga 43564905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 18421826 - 18421876
Alignment:
Q  222 gacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||| |||||||||| |||||||||||||||||||||| | ||||||||||    
T  18421826 gacatgtgtcgtgtccgacgccgacacatataattacactggattatgtga 18421876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 21576689 - 21576780
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||| ||| ||| ||||||||| ||||||||  || |||||||||||||||||| |||  |||||| | |||||||| |  |||||||||    
T  21576689 gaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaattatgtga 21576780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 30098978 - 30099060
Alignment:
Q  177 ctacgaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattaca 259  Q
    |||||||||| | | ||| || |||| | ||||||||  || ||||||||||||||| || ||| ||||||||||||||||||    
T  30098978 ctacgaagcacgaacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacaccgacacatataattaca 30099060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 35223053 - 35222962
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||| ||| ||| ||||||| ||||||||||  || ||||||||||||| |||| ||| ||||||||||||||||||||  |||||||||    
T  35223053 gaagcacggacactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtccgacaccgacacatataattacattgaattatgtga 35222962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 40993279 - 40993370
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||||||| ||| ||||||||| |||||||| ||| || |||| |||||||||| ||| |||||||||||||||||| |  |||||||||    
T  40993279 gaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattatgtga 40993370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 2941635 - 2941595
Alignment:
Q  219 tcagacacgtgtcgtgtctgacgccgacacatataattaca 259  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  2941635 tcagacacgtgtcgtgtccgacaccgacacatataattaca 2941595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 55401190 - 55401099
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||| ||| ||| ||||||||| |||||||  ||| || ||||||||||||||| ||| ||||||| | |||||||| |  |||||||||    
T  55401190 gaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtga 55401099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 40258877 - 40258968
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||||||| ||| ||||||||| |||||||||||| || |||| |||||||||||||| ||||||| | |||||||| |  |||||||||    
T  40258877 gaagcatggacactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtga 40258968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 29163336 - 29163416
Alignment:
Q  192 acttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    ||||||| |||||  ||||||| ||| |||| ||||||||||||| ||| |||||||||||||||| |||  |||||||||    
T  29163336 acttctctgattagccgtgtcccggtgtcaggcacgtgtcgtgtccgacaccgacacatataattaaattgaattatgtga 29163416  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 5898211 - 5898301
Alignment:
Q  182 aagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    ||||| ||| ||| |||||||||  ||||||| ||| |  ||||||||||||||||||| ||||| |||||||||||| |  |||||||||    
T  5898211 aagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatgtga 5898301  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 26830701 - 26830612
Alignment:
Q  182 aagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    ||||| ||| ||| ||| ||||| |||||||| ||||||  |||||||| ||||||||| | ||||| ||||||||||||| |||||||||    
T  26830701 aagcacggacactcctctgattaggcgtgtcccggtatcgaacacgtgtagtgtctgacac-gacacttataattacatttaattatgtga 26830612  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 38078599 - 38078696
Alignment:
Q  175 ttctacgaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    ||||| |||||| | ||||| ||||||||| |||||||||||| |   ||| |||||||||| ||| ||||||| | ||||||||||  |||||||||    
T  38078599 ttctatgaagcacgaatactcctcggattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtga 38078696  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 32461397 - 32461465
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacaca 249  Q
    |||||| ||| |||||| |||||| ||||||||  || |||||||||||||||||| ||| ||||||||    
T  32461397 gaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacaca 32461465  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 37598946 - 37598868
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattaca 259  Q
    |||||| ||| ||| ||||||||| ||||||||   | || ||||||||||||||| ||| ||||||| ||||||||||    
T  37598946 gaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacaccgacacttataattaca 37598868  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 33001271 - 33001324
Alignment:
Q  219 tcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  33001271 tcagacacgtgtcgtgtccgacaccgacacatataattacatttaattatgtga 33001324  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 272
Target Start/End: Complemental strand, 34595254 - 34595158
Alignment:
Q  176 tctacgaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||| |||||| ||| ||| ||||||||| | |||||| ||| |||||||||||||||||| ||| ||||||| | |||||||| |  |||||||||    
T  34595254 tctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtga 34595158  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 7378100 - 7378003
Alignment:
Q  175 ttctacgaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    ||||| |||||| ||| ||||||| |||||  ||||||| ||| || ||  | ||||||||| ||| ||||||||||||||||||||  |||||||||    
T  7378100 ttctatgaagcacggacacttctcagattagccgtgtcccggtgtcggatgcatgtcgtgtccgacaccgacacatataattacattgaattatgtga 7378003  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 30851676 - 30851635
Alignment:
Q  220 cagacacgtgtcgtgtctgacgccgacacatataattacatt 261  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  30851676 cagacacgtgtcgtgtccgacaccgacacatataattacatt 30851635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 9658974 - 9658903
Alignment:
Q  201 attaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||| |||||| | ||| ||||||||||||||||||| || |||||| ||||||||||| |  |||||||||    
T  9658974 attaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtga 9658903  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 7740731 - 7740678
Alignment:
Q  206 gcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattaca 259  Q
    ||||||||||||||| |  |||||||||||| ||| | ||||||||||||||||    
T  7740731 gcgtgtcctggtatcgggtacgtgtcgtgtccgacactgacacatataattaca 7740678  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 20242687 - 20242762
Alignment:
Q  197 tcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||| | ||||||||| || |||||||||||| ||||| ||| |||||||||||||||||| |  |||||||||    
T  20242687 tcggataaggcgtgtcctcgtgtcagacacgtgttgtgtccgacaccgacacatataattacactgaattatgtga 20242762  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 37559099 - 37559001
Alignment:
Q  174 gttctacgaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||| |||||| ||| ||| |||||||||||||||| | ||| || ||||||||||  ||| ||| ||||||| | ||||||||||  |||||||||    
T  37559099 gttctatgaagcacggacactcctcggattaagcgtgtaccggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaattatgtga 37559001  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 18840957 - 18841046
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgt 270  Q
    |||||| ||| ||| ||||||||| | |||||| ||| || |||| |||||||||||||| ||||||| | |||||||| || |||||||    
T  18840957 gaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacacttaattatgt 18841046  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 30404806 - 30404885
Alignment:
Q  193 cttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||| ||||| || ||||||||| || |||| |||||||||| ||||||||||| | |||||||| |  |||||||||    
T  30404806 cttctcagattaggcatgtcctggtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactgaattatgtga 30404885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 28596584 - 28596506
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattaca 259  Q
    |||||| ||| ||| ||||||||| | ||||||  || || ||||||||||||||| ||| ||||||| ||||||||||    
T  28596584 gaagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataattaca 28596506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 70377 - 70315
Alignment:
Q  197 tcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattaca 259  Q
    |||||||| || ||||||||| || ||||||||||||||| ||| ||||||| ||||||||||    
T  70377 tcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattaca 70315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 126306 - 126372
Alignment:
Q  196 ctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacattt 262  Q
    |||||||||  ||||||| |||||  ||||||||||||||| ||| | |||||||||||||||||||    
T  126306 ctcggattagccgtgtcccggtattggacacgtgtcgtgtccgacactgacacatataattacattt 126372  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 3951480 - 3951558
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattaca 259  Q
    |||||| ||| ||| || |||||| |||||| |  || |||||||||||||||||||||| ||||||||||||| ||||    
T  3951480 gaagcacggaaactccttggattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacaccgacacatataagtaca 3951558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 14134799 - 14134723
Alignment:
Q  196 ctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||| |||| ||||||||||||  | |||||||||||||| |||| |||||| ||||||||||| |  |||||||||    
T  14134799 ctcgaattaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccgacatatataattacactgaattatgtga 14134723  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 33405354 - 33405406
Alignment:
Q  207 cgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattaca 259  Q
    ||||||| ||| ||||||| |||||||||| ||| ||||||||||||||||||    
T  33405354 cgtgtccaggtgtcagacatgtgtcgtgtccgacaccgacacatataattaca 33405406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 926732 - 926810
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattaca 259  Q
    |||||| ||| ||| ||||||| |||| ||||| ||| || ||||||||||| ||| ||| ||||||| ||||||||||    
T  926732 gaagcacggacactcctcggataaagcatgtcccggtgtcggacacgtgtcgcgtccgacaccgacacttataattaca 926810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 29447043 - 29447109
Alignment:
Q  181 gaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgaca 247  Q
    |||||| ||| ||| || |||||| |||||||||||| |||||||| ||||||||| ||| ||||||    
T  29447043 gaagcacggacactcctaggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgaca 29447109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 31557093 - 31557020
Alignment:
Q  199 ggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacacatataattacatttgattatgtga 272  Q
    |||||| |||||||||||| || |||| |||||||||||||| |||| || | |||||||| |  |||||||||    
T  31557093 ggattaggcgtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacactgaattatgtga 31557020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 263320 - 263372
Alignment:
Q  196 ctcggattaagcgtgtcctggtatcagacacgtgtcgtgtctgacgccgacac 248  Q
    ||||||||| ||||||| |||||||  |||||||||||||||||| |||||||    
T  263320 ctcggattaggcgtgtcttggtatcgaacacgtgtcgtgtctgacaccgacac 263372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 241725 - 241665
Alignment:
Q  176 tctacgaagcatggatacttctcggattaagcgtgtcctggtatcagacacgtgtcgtgtc 236  Q
    |||| |||||| ||| ||||||||||||| |||||||| ||| || |||||||||||||||    
T  241725 tctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtc 241665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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