View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12086_low_3 (Length: 688)
Name: NF12086_low_3
Description: NF12086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12086_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 34894380 - 34893936
Alignment:
| Q |
1 |
ggtggagtgaagacactagagacaaggaagtgattttggttgttcatgttcaaggcagttcatcagtccaaactagcagtcacaaaattcatgtgcgcca |
100 |
Q |
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| T |
34894380 |
ggtggagtgaagacactagagacaaggaagtgattttggttgttcatgttcaaggcagttcatcagtccaaactagcagtcacaaaattcatgtgcgcca |
34894281 |
T |
|
| Q |
101 |
tggcttctcaggaaagccgactcgaaccgactcaaaatccaacagtgcaagaagaagtcatgtaagctaattgcatagaatagtttaagaaattttgctt |
200 |
Q |
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| T |
34894280 |
ttgcttctcaggaaagccgactcgaaccgactcaaaatccaacagtgcaagaagaagtcatgtaagctaattgcatagaatagtttaagaaattttgctt |
34894181 |
T |
|
| Q |
201 |
tacaaagaaggagggaaatgttaatagcatataagcaaagtattagaagcatggttgaagaaacaaaaacaaatgttataagtctcagtacaagttagtt |
300 |
Q |
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| T |
34894180 |
tacaaagaaggagggaaatgttaatagcatataagcaaagtattagaagcatggttgaagaaacaaaaacaaatgttataagtctcagtacaagttagtt |
34894081 |
T |
|
| Q |
301 |
agactgagggtcttaaatccttctttgtgtaaatttggtgaagaaattttgtgaaatgcataatatactatgtttctgcttttaattatcaatttttggt |
400 |
Q |
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| T |
34894080 |
agactgagggtcttaaatccttctttgtgtaaatttggtgaagaaattttgtgaaatgcataatatactatgtttctgcttttaattatcaatttttggt |
34893981 |
T |
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| Q |
401 |
ggtttatttgtctgctttatatcatcattttttggttgcttactc |
445 |
Q |
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| T |
34893980 |
ggtttatttgtctgccttatatcatcattttttggttgcttactc |
34893936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 444 - 671
Target Start/End: Complemental strand, 34893843 - 34893616
Alignment:
| Q |
444 |
tcgacgaagcaacatctcaagaactaacatctgccttcacatttgctccactttcgccgtggcgtgcttagatgtttgtgttttagtgtcaccgtgattt |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34893843 |
tcgacgaagcaacatctcaagaactaacatctgccttcacatttgctccactttcgccgtggcgtgcttagatgtttgtgttttagtgtcaccgtgattt |
34893744 |
T |
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| Q |
544 |
taagaaaattaaactcaagaatttcaacaaaacacccgatgttgactgtgatttcgttaaactcaacacaagtcatgatccgttgatatcaactatttcc |
643 |
Q |
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| T |
34893743 |
taagaaaattaaacttaagaatttcaacaaaacacgagatgttgactgtgatttcgttaaactcaacacaagtcatgatccgttgatatcaactatttcc |
34893644 |
T |
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| Q |
644 |
caaaacatggtccaaaaagtaacatact |
671 |
Q |
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| T |
34893643 |
caaaacatggtccaaaaagtaacatact |
34893616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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