View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12086_low_4 (Length: 615)
Name: NF12086_low_4
Description: NF12086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12086_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 19 - 604
Target Start/End: Original strand, 48593159 - 48593740
Alignment:
| Q |
19 |
acatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattccg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
48593159 |
acatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattctg |
48593258 |
T |
|
| Q |
119 |
aaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48593259 |
aaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttaggccagaaaggtttttagaaaaca |
48593358 |
T |
|
| Q |
219 |
aagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48593359 |
aagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccac |
48593458 |
T |
|
| Q |
319 |
tgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcct |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
48593459 |
tgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcct |
48593558 |
T |
|
| Q |
419 |
ggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgata |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
48593559 |
ggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata |
48593658 |
T |
|
| Q |
519 |
aattaagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctctcctatttctctttacttcttctctc |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48593659 |
----aagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctcttctatttctctttacttcttctctc |
48593740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 19 - 604
Target Start/End: Original strand, 48597770 - 48598351
Alignment:
| Q |
19 |
acatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattccg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48597770 |
acatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattctg |
48597869 |
T |
|
| Q |
119 |
aaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48597870 |
aaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttaggccagaaaggtttttagaaaaca |
48597969 |
T |
|
| Q |
219 |
aagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597970 |
aagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccac |
48598069 |
T |
|
| Q |
319 |
tgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcct |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
48598070 |
tgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcct |
48598169 |
T |
|
| Q |
419 |
ggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgata |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48598170 |
ggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata |
48598269 |
T |
|
| Q |
519 |
aattaagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctctcctatttctctttacttcttctctc |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48598270 |
----aagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctcttctatttctctttacttcttctctc |
48598351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 516
Target Start/End: Complemental strand, 23231099 - 23230593
Alignment:
| Q |
19 |
acatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattccg |
118 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |||| |
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|
| T |
23231099 |
acatgccatcataaaagaaaccatgaggcttcaccctccgataccgatgattatgaggaaaggaatggaagattgtgttgttgatggtaaaatggttcca |
23231000 |
T |
|
| Q |
119 |
aaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaaca |
218 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||| ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
23230999 |
aaaggatcaatggtttgtgtgaacatttgggctatgggaagagaccaaaagatatgggaaaatgcattagattttaagccagaaaggtttttagaaaaca |
23230900 |
T |
|
| Q |
219 |
aag---------atattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtca |
309 |
Q |
| |
|
||| |||| || ||||||||||| || | ||||||| | ||||||||||||||||||||||| || ||||||||||| |||||| | || || |
|
|
| T |
23230899 |
aagaaggaaacaatatagatatgaaagggcatcactatgagttgctaccatttggttctggaaggagaggctgccctggtatgccgttggccatgcgcca |
23230800 |
T |
|
| Q |
310 |
attacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggat |
409 |
Q |
| |
|
||| ||||| ||| | || |||||||| ||||||||||||||||| |||||||| || ||| |||| || ||||||| |||| | ||||||||| |
|
|
| T |
23230799 |
attgcccaccgtagtcggggctttggtgcaatgctttgagtggaaaatgcttgactccgaaggtaaaatattagatcgaggcaaaacaatcgatatggat |
23230700 |
T |
|
| Q |
410 |
gaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaa |
509 |
Q |
| |
|
||| | ||||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||||| ||| |||||||| |||| |||||||||| |
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|
| T |
23230699 |
gaaagacctggattgaccgctcctagagccaatgatcttatttgtattccgatttcaagaatgaacccaaatacttttcttcagcttttgtaaaagggaa |
23230600 |
T |
|
| Q |
510 |
tttgtga |
516 |
Q |
| |
|
||||||| |
|
|
| T |
23230599 |
tttgtga |
23230593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 29 - 474
Target Start/End: Complemental strand, 23223344 - 23222890
Alignment:
| Q |
29 |
ataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatggaagattgtgtggttgatggtaacatgattccgaaaggctcaa |
128 |
Q |
| |
|
|||||||||||| |||||||||| || || ||||||||||| ||||| |||| ||||||||||||| ||||| || ||||| |||||||||| |
|
|
| T |
23223344 |
ataaaagaaacattgaggcttcacccaccactaccgatgattgctaggaaaggaacaaaagattgtgtggtcgatgggaaaatgatcaaaaaaggctcaa |
23223245 |
T |
|
| Q |
129 |
tggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaa-------aacaaag |
221 |
Q |
| |
|
| |||||||| |||||||||||||| | ||||||| |||||| ||| |||||||| |||||||||| || ||||||||||||||| || | || |
|
|
| T |
23223244 |
tagtttgtgtgaacatttgggctattggaagggactcaaagacttggaaaaacccactagagtttaggcctgaaaggtttttagaatctggaaaagagag |
23223145 |
T |
|
| Q |
222 |
--atattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccact |
319 |
Q |
| |
|
| || || || |||||||| | |||||||||||||||||||||||||||||||||||||| || || |||||||||||| | || |||| || ||| |
|
|
| T |
23223144 |
tgagatagatatcaaagggcatgactttgagttgttgccatttggttctggaaggagaggttgcccggggatgcctttggccatgcgcgaattgccgact |
23223045 |
T |
|
| Q |
320 |
gtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctg |
419 |
Q |
| |
|
|| ||||| ||||| ||||||||||||||||||||||||||||| || ||| |||| | |||||||||||| | ||||||||||||||||||| |
|
|
| T |
23223044 |
gtgattggagctttagtacaatgctttgagtggaagatgcttgactctgaaggtaaattattagatcaaggcaaaacaatcgatatggatgaacggcctg |
23222945 |
T |
|
| Q |
420 |
gattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaa |
474 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
23222944 |
gattgactgctcctagagccaatgatcttttttgcattccagttgcaagattgaa |
23222890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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