View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12086_low_5 (Length: 604)
Name: NF12086_low_5
Description: NF12086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12086_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 36176863 - 36176283
Alignment:
| Q |
1 |
ttgtacataaattttaaagcggtgtgtaaacactttaagtagtttaggttcggtttgtcccatcaatttataccaatcgaatgcatatgagtaaactgat |
100 |
Q |
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| T |
36176863 |
ttgtacataaattttaaagcggtgtgtaaacactttaagtagtttaggttcggtttgtcccatcaatttatatcaatcgaatgcatatgagtaaactgat |
36176764 |
T |
|
| Q |
101 |
gaatttccttcataatactttcaaattttgatgtaacttgcacattcaaatcaagcatattgtttatgacaaagttttgactaacnnnnnnnnnn-catg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36176763 |
gaatttccttcataatactttcaaattttgatgtaacttgcacattcaaatcaagcatattgtttatgacaaagttttgactaacaaaaaaaaaaacatg |
36176664 |
T |
|
| Q |
200 |
attttcatgttatattttctgcccatagaatgactatttttaaagaaatttatgtcatttgataaaagaaaaacaattcttaaaaattttcctctttatc |
299 |
Q |
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| T |
36176663 |
attttcatgttatattttctgcccatagaatgactatttttaaagaaatttatgtcatttgataaaagaaaaacaattcttcaaaattttccactttatc |
36176564 |
T |
|
| Q |
300 |
ggacacaattgttacattacttcaatagtgaagcaaatatatcatttcattgaaatgtctctatttaaccactgaaaattttcaaatttatattttgaaa |
399 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
36176563 |
agacacaatagttacattacttcaatagtgaagcaaatatatcatttcattgaaatgtctctatttaaccactaaaaaatttcaaatttatattttgaat |
36176464 |
T |
|
| Q |
400 |
tttctctcgcaaccattcttgtaagtcaatgagaannnnnnnnnnnnnnnnncatttccattaattaattaattaattaaaaatgtaccaacaagcgaaa |
499 |
Q |
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|| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
36176463 |
ttcctctggcaaccattcttgtaagtcaatgagaa-ttttttatttttttctcatttccatt--------aattaattaaaaatgtaccaacaagcgaaa |
36176373 |
T |
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| Q |
500 |
tcttctctttaagccaaagtgacttcatacatgatcttctgttagcatatgttgggtgtcttggcccagctaatttggtggttcattttg |
589 |
Q |
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| T |
36176372 |
tcttctctttaagccaaagtgacttcatacatgatcttctgttagcatatgttgggtgtcttggcccagctaatttggtggttcattttg |
36176283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 12634345 - 12634254
Alignment:
| Q |
301 |
gacacaattgttacattacttcaatagtgaagcaaatatatcatttcattgaaatgtctctatttaaccactgaaaattttcaaatttatattt |
394 |
Q |
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|||||||| |||||||| |||||||||| || || |||||| ||||||| ||| |||||||||||| || || || ||||||||||||||||| |
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| T |
12634345 |
gacacaatggttacattgcttcaatagtcaaacat-tatatcctttcattaaaa-gtctctatttaatcattgcaatttttcaaatttatattt |
12634254 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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