View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12086_low_6 (Length: 570)
Name: NF12086_low_6
Description: NF12086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12086_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 17 - 552
Target Start/End: Complemental strand, 4971463 - 4970943
Alignment:
| Q |
17 |
catcagaatctgcgtttagtattggcgcccgaattgtaaataggtataaaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4971463 |
catcagaatctgcgtttagtattggcgcccgagttgtgaataagtatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagcta |
4971364 |
T |
|
| Q |
117 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgatttatattttatattgttgtcaaggttgcaacaattgtgaaagaatc |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4971363 |
gttacatggttttgaaggtatgatttttatagttctatcatttttacaattgttttatagtttatattgttgtcaaggttgcaacagttgtgaaagaatc |
4971264 |
T |
|
| Q |
217 |
tgatatgttgctactcatatgctgatttgttagcctaaagaaataaaaagtagaatcctggaagtgtgtctcaggaaaattaaaattttagcctacaaaa |
316 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4971263 |
tgatatgttg---------------tttgttagcctaaaaaaataaaaagtagaatcttggaaatgtgtctcaggaaaattaaaactttagcctacaaaa |
4971179 |
T |
|
| Q |
317 |
ttacaacagcacatggtaaacaaactctactttaaatacatatgaaaactatctgaatagtggttcatccaagtttaacagcaggagtaatgtctttgtc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4971178 |
ttacaacagcacatggtaaacaaactctactttaaatacatatgaaaactatctgaatagtggttcatccaagtttaacagcaggagtaatgtctttgtc |
4971079 |
T |
|
| Q |
417 |
tagtcaaaccttggattccatagtgaaagtatgctacagtttaacaacacttctcttattttgtatgttaacatgtttctacgtatatacattctgcaaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
4971078 |
tagtcaaaccttggattccatagtgaaagtatgctacagtttaacaacacttctcttattttgtatgttaacatgtttctacatatatacattatgcaaa |
4970979 |
T |
|
| Q |
517 |
aggaatagtgagaagacaacttttaactcttcaagc |
552 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4970978 |
aggaataatgagaagacaacttttaactcttcaagc |
4970943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 4696878 - 4696711
Alignment:
| Q |
17 |
catcagaatctgcgtttagtattggcgcccgaattgtaaataggtataaaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4696878 |
catcagaatctgcgtttagtattggcgcccgagttgtgaataggtatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
4696779 |
T |
|
| Q |
117 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgatttatattttatattgttgtcaa |
192 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
4696778 |
gttacatggttttgaaggtat--------tagttctatcatttttacaattgttttatagtttatattattgtcaa |
4696711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 39490310 - 39490135
Alignment:
| Q |
17 |
catcagaatctgcgtttagtattggcgcccgaattgtaaataggtataaaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39490310 |
catcagaatctgcgtttagtattggcgcccgagttgtgaataggtatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
39490211 |
T |
|
| Q |
117 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgatttatattttatattgttgtcaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
39490210 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgttttatagtttatattattgtcaa |
39490135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 7505396 - 7505440
Alignment:
| Q |
123 |
tggttttgaaggtatggtttttatagttctatcatttttacaatt |
167 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||||||| |||| |
|
|
| T |
7505396 |
tggttttgaaggcatggcttttaaagttctatcatttttataatt |
7505440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 27971483 - 27971658
Alignment:
| Q |
17 |
catcagaatctgcgtttagtattggcgcccgaattgtaaataggtataaaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27971483 |
catcagaatctgcgtttagtattggcgcccgagttgtgaataggtatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
27971582 |
T |
|
| Q |
117 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgatttatattttatattgttgtcaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
27971583 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgttttatagtttatattattgtcaa |
27971658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 6885690 - 6885515
Alignment:
| Q |
17 |
catcagaatctgcgtttagtattggcgcccgaattgtaaataggtataaaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6885690 |
catcagaatctgcgtttagtattggcgcccgagttgtgaataggtatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
6885591 |
T |
|
| Q |
117 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgatttatattttatattgttgtcaa |
192 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
6885590 |
gttgcatggttttgaaggtatggtttttatagttctatcatttttacaattgttttatagtttatattattgtcaa |
6885515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 33985096 - 33985269
Alignment:
| Q |
17 |
catcagaatctgcgtttagtattggcgcccgaattgtaaataggtataaaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33985096 |
catcagaatctgcgtttagtattggcgcccgagttgtgaataggtatataagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtaactg |
33985195 |
T |
|
| Q |
117 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgatttatattttatattgttgtc |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
33985196 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgttttatagtttatattattgtc |
33985269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 12748727 - 12748902
Alignment:
| Q |
17 |
catcagaatctgcgtttagtattggcgcccgaattgtaaataggtataaaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12748727 |
catcagaatctgcgtttagtattggcgcccgagttgtgaataggtatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
12748826 |
T |
|
| Q |
117 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgatttatattttatattgttgtcaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
12748827 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgttttatagtttatattattgtcaa |
12748902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 24683595 - 24683429
Alignment:
| Q |
17 |
catcagaatctgcgtttagtattggcgcccgaattgtaaataggtataaaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
116 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||| |||| ||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
24683595 |
catcagaatctacatttagtattggcgcccgagttgtgaataagtatagaaattcaatgaaagatgattttgttcaggctctcaagtgcgcacgtagctg |
24683496 |
T |
|
| Q |
117 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgatttatattttatat |
183 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
24683495 |
gttacatggttttgaaggtatgatttttaaagttctatcatttttacaatggttttatagtttatat |
24683429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 24683340 - 24683301
Alignment:
| Q |
179 |
tatattgttgtcaaggttgcaacaattgtgaaagaatctg |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24683340 |
tatatagttgtcaaggttgcaacaattgtgaaagaatctg |
24683301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 5e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 3410962 - 3410787
Alignment:
| Q |
17 |
catcagaatctgcgtttagtattggcgcccgaattgtaaataggtataaaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3410962 |
catcagaatctgtgtttagtattggcgcccgagttgtgaataggtatagaagttaaatgaaagatgattatgttcaggctctcttgtgcgcacgtagctg |
3410863 |
T |
|
| Q |
117 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgatttatattttatattgttgtcaa |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
3410862 |
gttacatggttttgaaggtatggtttttatagttctatcatttttacaattgttttatagtttatattattgtcaa |
3410787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 1705043 - 1705014
Alignment:
| Q |
186 |
ttgtcaaggttgcaacaattgtgaaagaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1705043 |
ttgtcaaggttgcaacaattgtgaaagaat |
1705014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 3e-71; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 20142574 - 20142746
Alignment:
| Q |
21 |
agaatctgcgtttagtattggcgcccgaattgtaaataggtataaaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggtta |
120 |
Q |
| |
|
||||||| |||||||||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20142574 |
agaatctacgtttagtattggcgcccaagttgtgaataggtatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacatagctggtta |
20142673 |
T |
|
| Q |
121 |
catggttttgaaggtatggtttttatagttctatcatttttacaattgatttatattttatattgttgtcaag |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
20142674 |
catggttttgaaggtatggtttttatagttctatcatttttacaattgttttatagtttatattattgtcaag |
20142746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 22190265 - 22190093
Alignment:
| Q |
21 |
agaatctgcgtttagtattggcgcccgaattgtaaataggtataaaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctggtta |
120 |
Q |
| |
|
||||||| |||||||||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22190265 |
agaatctacgtttagtattggcgcccaagttgtgaataggtatagaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacatagctggtta |
22190166 |
T |
|
| Q |
121 |
catggttttgaaggtatggtttttatagttctatcatttttacaattgatttatattttatattgttgtcaag |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
22190165 |
catggttttgaaggtatggtttttatagttctatcatttttacaattgttttatagtttatattattgtcaag |
22190093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 262 - 422
Target Start/End: Complemental strand, 29879648 - 29879484
Alignment:
| Q |
262 |
aaaagtagaatcctggaagtgt--gtctcaggaaaattaaaattttagcctacaaaatt-acaacagcacatggtaaacaaactctactttaaatacata |
358 |
Q |
| |
|
||||||||||||||||||| || |||| |||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
29879648 |
aaaagtagaatcctggaagcgtttgtcttaggaaaattaaaattttatcctacaaaatttacaacagcacatgataaacaaactctacgttaaatacata |
29879549 |
T |
|
| Q |
359 |
tgaaaactatctgaatagtggttcatccaagtttaacagcaggag-taatgtctttgtctagtca |
422 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29879548 |
tgaaaactctctgaatagtggttcatccaagtttaacagcaggagataatgtctttgtctagtca |
29879484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 464 - 523
Target Start/End: Complemental strand, 29879485 - 29879426
Alignment:
| Q |
464 |
cacttctcttattttgtatgttaacatgtttctacgtatatacattctgcaaaaggaata |
523 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
29879485 |
cacttctcttattttgtatgttaacctgtttctacatatatactttctgcaagaggaata |
29879426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 29354144 - 29354187
Alignment:
| Q |
246 |
ttagcctaaagaaataaaaagtagaatcctggaagtgtgtctca |
289 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
29354144 |
ttagcctatggaaataaaaagtagaatcctggaagtgtgcctca |
29354187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 552
Target Start/End: Complemental strand, 29879305 - 29879270
Alignment:
| Q |
517 |
aggaatagtgagaagacaacttttaactcttcaagc |
552 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29879305 |
aggaataatgagaagacaacttttaactcttcaagc |
29879270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 27966700 - 27966656
Alignment:
| Q |
123 |
tggttttgaaggtatggtttttatagttctatcatttttacaatt |
167 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||||||||||||| |
|
|
| T |
27966700 |
tggttttgaaggcatgacttttaaagttctatcatttttacaatt |
27966656 |
T |
|
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 8097373 - 8097229
Alignment:
| Q |
17 |
catcagaatctgcgtttagtattggcgcccgaattgtaaataggtataaaagttcaatgaaagatgattctgttcaggctctcttgtgcgcacgtagctg |
116 |
Q |
| |
|
||||||||| || |||||||||||| | ||| || | |||| ||||| ||||||||||||||||| | |||| || |||| ||| ||||||| | |
|
|
| T |
8097373 |
catcagaatatggttttagtattggctctcgagttctgaataagtatagtagttcaatgaaagatgaattggttccatctgtcttttgcacacgtagtta |
8097274 |
T |
|
| Q |
117 |
gttacatggttttgaaggtatggtttttatagttctatcattttt |
161 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||||||||||| |
|
|
| T |
8097273 |
gttacatggttttaaaggtaccatttttaatgttctatcattttt |
8097229 |
T |
|
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