View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12086_low_7 (Length: 517)
Name: NF12086_low_7
Description: NF12086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12086_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 62 - 404
Target Start/End: Original strand, 32928403 - 32928731
Alignment:
| Q |
62 |
cttaaatggaaaacatgggtggccaaagattgaagaggtggaggacgggtattaatgaactaacatcatgatcttctcgtggtataatatatatttttca |
161 |
Q |
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| T |
32928403 |
cttaattggaaaacatggatggccaaagatcgaagaggtggaggaagggtattaatgaactaa-atcgtgatcttctcgtggtatagt------ttttct |
32928495 |
T |
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| Q |
162 |
ggaaaagtagcgttttcctatcgcaaatattagtttacatgaaaaagtcttatcaattgagcaaatgacatatcaacttatcaaacaactatagagtcct |
261 |
Q |
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| T |
32928496 |
ggaaaacacgcgtttccctatcgcaaatgttagtttacatgaaaaagtcttatcaattgagcaaatgacatatcaacttatcaaacgactt----gtc-t |
32928590 |
T |
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| Q |
262 |
ttaaacaccaaattttactgttgataataaaattataagctcaaacgatattgcaaaaataacatctcnnnnnnnctataatttgttgagagaattactt |
361 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
32928591 |
ttaaacaccaaattttactgttgattataaaattataagctcaaacgatattgcaaaaataacatctcaagaaaactataatttgttgagagaa--actt |
32928688 |
T |
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| Q |
362 |
gtttaccaaatacatcttatttgatcaaaaaagtttgtaagtt |
404 |
Q |
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| T |
32928689 |
gtttaccaaacacatctcatgtgatcaaacatgtttgtaagtt |
32928731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 501
Target Start/End: Original strand, 32931819 - 32931862
Alignment:
| Q |
458 |
ttttaacgcatcccttaatgattttacttgtttaactaatatct |
501 |
Q |
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| T |
32931819 |
ttttaacgcatccctcaatgattttacttgtttaactaatatct |
32931862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 3609073 - 3609200
Alignment:
| Q |
30 |
aaaatatcatgaataattaaaacctttagatc----cttaaatggaaaacatgggtggccaaagattgaagaggtggaggacgggt----attaatgaac |
121 |
Q |
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||||||||| || ||||||||||| ||||||| || || ||||||||||||||| |||||||||||| |||||||||| |||| |||||||||| |
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| T |
3609073 |
aaaatatcacgagtaattaaaaccgttagatcttggctcaagtggaaaacatgggtgaccaaagattgaaaaggtggaggaggggtattaattaatgaac |
3609172 |
T |
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| Q |
122 |
taacatcatgatcttctcgtggtataat |
149 |
Q |
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| T |
3609173 |
tagcatcgtgatcttctcgtggtataat |
3609200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 1750873 - 1750748
Alignment:
| Q |
27 |
ccaaaaatatcatgaataattaaaacctttagatc----cttaaatggaaaacatgggtggccaaagattgaagaggtggaggacgggtattaatgaact |
122 |
Q |
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|||||| ||||| |||||||| |||| ||||||| ||||| |||||||||||| |||| || ||||||||||||||||| |||||||||| |||| |
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| T |
1750873 |
ccaaaagtatcaagaataatttaaacagttagatcttggcttaattggaaaacatggatggctaatgattgaagaggtggaggtggggtattaattaact |
1750774 |
T |
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| Q |
123 |
aacatcatgatcttctcgtggtataat |
149 |
Q |
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| T |
1750773 |
aacatcgtgatc-tctcgtggtataat |
1750748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 33910272 - 33910187
Alignment:
| Q |
63 |
ttaaatggaaaacatgggtggccaaagattgaagaggtggaggacgggtattaatgaactaacatcatgatcttctcgtggtataat |
149 |
Q |
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|||| |||||||||||| |||| |||||||||||||||||||| |||||||||| |||||||||| ||||| ||||| |||||||| |
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| T |
33910272 |
ttaattggaaaacatggatggctaaagattgaagaggtggaggtggggtattaattaactaacatcgtgatc-tctcggggtataat |
33910187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 19661265 - 19661180
Alignment:
| Q |
63 |
ttaaatggaaaacatgggtggccaaagattgaagaggtggaggacgggtattaatgaactaacatcatgatcttctcgtggtataat |
149 |
Q |
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|||| |||||||||||| |||| |||||||||||||||| ||| | ||| |||| |||||||||| ||||| ||| |||||||||| |
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| T |
19661265 |
ttaattggaaaacatggatggctaaagattgaagaggtgaaggtggtgtagtaattaactaacatcgtgatc-tctggtggtataat |
19661180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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