View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12087_low_1 (Length: 537)
Name: NF12087_low_1
Description: NF12087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12087_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 20 - 523
Target Start/End: Complemental strand, 592741 - 592240
Alignment:
| Q |
20 |
gtgataaccttagacgacaattgaacatgaatggaggtagtaataactttatagtagatggtggtgatacatttttatcacaatttcagcagtcatgttt |
119 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
592741 |
gtgataaccttagacgacaattgaaaatgaatggaggtagtaataactttatagtagatggtggtgatacattt--atcacaatgtcagcagtcatgttt |
592644 |
T |
|
| Q |
120 |
gcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacacttcaacttgaattcattatcatatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
592643 |
gcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacactgcaacttgaattcattatcatatt |
592544 |
T |
|
| Q |
220 |
ttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctgagacttgattgttggttactttat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
592543 |
ttgataagctggagaagctcttgaattctgtttcgacttgacatgatcatggtataataatggtatcaaacttctgagacttgattgtttgttactttat |
592444 |
T |
|
| Q |
320 |
gttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaaccaaatttacaggactatttctcaaagtggggatcaa |
419 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592443 |
gttgataattgtaaattcctctcttgcagctttctttggctgtgttgttttctcaaacatgaaccaaatttacaggactatttctcaaagtggggatcaa |
592344 |
T |
|
| Q |
420 |
gcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacaaccagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatga |
519 |
Q |
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| T |
592343 |
gcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacagccagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatga |
592244 |
T |
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| Q |
520 |
tgtc |
523 |
Q |
| |
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|||| |
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| T |
592243 |
tgtc |
592240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 523
Target Start/End: Original strand, 579687 - 580187
Alignment:
| Q |
20 |
gtgataaccttagacgacaattgaacatgaatggaggtagtaataactttatagtagatggtggtgatacatttttatcacaatttcagcagtcatgt-- |
117 |
Q |
| |
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||||||| |||| |||||||||||| ||||| | ||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||| |
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| T |
579687 |
gtgataaacttaaacgacaattgaaaatgaaagcaggtaataataactttatagtagatagtggtgatacattt--atcacaatgtcagctgtcatgtac |
579784 |
T |
|
| Q |
118 |
------ttgcatcccaatggttatcaac-tccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacacttcaacttgaattcat |
210 |
Q |
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||||||| |||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
579785 |
tcatgtttgcatct-aatggttatccacctccacacttttcatgaagccaaattctt--------tgaaaataaaattttacactgcaacttgaattcat |
579875 |
T |
|
| Q |
211 |
tatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctgagacttgattgttgg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
579876 |
tatcatattttgataagctggagaagctcttgaattctgtttggacttgacatgaccatggtataataatggtatcaaacctctgagacttgattgtttg |
579975 |
T |
|
| Q |
311 |
ttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaaccaaatttacaggactatttctcaaagt |
410 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
579976 |
tttctttatgttgataattgtaaattcctctcttgcaactttctttcactgtgtt-atttctcaaacatgaaccaaatttacaggactatttctcaaagt |
580074 |
T |
|
| Q |
411 |
ggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacaaccagtagatgccttttgggtcgtgaagttcgtgacaagct |
510 |
Q |
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| T |
580075 |
ggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacagccagtagatgtctcttgggtcgtgaagttcgtgacaagct |
580174 |
T |
|
| Q |
511 |
cttcgatgatgtc |
523 |
Q |
| |
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||||||||||||| |
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|
| T |
580175 |
cttcgatgatgtc |
580187 |
T |
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Back To:
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