View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12087_low_3 (Length: 479)
Name: NF12087_low_3
Description: NF12087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12087_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 592684 - 592240
Alignment:
| Q |
19 |
atggtggtgatacatttttatcacaatttcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaatt |
118 |
Q |
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| T |
592684 |
atggtggtgatacattt--atcacaatgtcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaatt |
592587 |
T |
|
| Q |
119 |
gaaaataaaattttacacttcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataa |
218 |
Q |
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| T |
592586 |
gaaaataaaattttacactgcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgacatgatcatggtataa |
592487 |
T |
|
| Q |
219 |
taatggtatcaaacttctgagacttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaa |
318 |
Q |
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| T |
592486 |
taatggtatcaaacttctgagacttgattgtttgttactttatgttgataattgtaaattcctctcttgcagctttctttggctgtgttgttttctcaaa |
592387 |
T |
|
| Q |
319 |
catgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacaaccagta |
418 |
Q |
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| T |
592386 |
catgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacagccagta |
592287 |
T |
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| Q |
419 |
gatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtc |
465 |
Q |
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| T |
592286 |
gatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtc |
592240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 54 - 465
Target Start/End: Original strand, 579785 - 580187
Alignment:
| Q |
54 |
tcatgtttgcatcccaatggttatcaac-tccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacacttcaacttgaattcat |
152 |
Q |
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||||||||||||| |||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
579785 |
tcatgtttgcatct-aatggttatccacctccacacttttcatgaagccaaattctt--------tgaaaataaaattttacactgcaacttgaattcat |
579875 |
T |
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| Q |
153 |
tatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctgagacttgattgttgg |
252 |
Q |
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| T |
579876 |
tatcatattttgataagctggagaagctcttgaattctgtttggacttgacatgaccatggtataataatggtatcaaacctctgagacttgattgtttg |
579975 |
T |
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| Q |
253 |
ttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttgttttctgaaacatgaaccaaatttacaggactatttctcaaagt |
352 |
Q |
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| T |
579976 |
tttctttatgttgataattgtaaattcctctcttgcaactttctttcactgtgtt-atttctcaaacatgaaccaaatttacaggactatttctcaaagt |
580074 |
T |
|
| Q |
353 |
ggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacaaccagtagatgccttttgggtcgtgaagttcgtgacaagct |
452 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| |
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| T |
580075 |
ggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttgacagccagtagatgtctcttgggtcgtgaagttcgtgacaagct |
580174 |
T |
|
| Q |
453 |
cttcgatgatgtc |
465 |
Q |
| |
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||||||||||||| |
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| T |
580175 |
cttcgatgatgtc |
580187 |
T |
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