View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12087_low_4 (Length: 470)

Name: NF12087_low_4
Description: NF12087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12087_low_4
NF12087_low_4
[»] chr1 (30 HSPs)
chr1 (8-454)||(3340375-3340821)
chr1 (1-448)||(2948178-2948625)
chr1 (1-450)||(3349253-3349702)
chr1 (73-448)||(9818692-9819067)
chr1 (29-406)||(3361633-3362007)
chr1 (8-123)||(3340856-3340971)
chr1 (8-123)||(3341156-3341271)
chr1 (8-122)||(3341007-3341121)
chr1 (324-443)||(4323147-4323266)
chr1 (1-154)||(9820163-9820319)
chr1 (320-407)||(3372604-3372691)
chr1 (329-407)||(3378648-3378726)
chr1 (76-189)||(3378863-3378976)
chr1 (95-189)||(2006580-2006674)
chr1 (324-389)||(4335037-4335102)
chr1 (18-130)||(3218247-3218359)
chr1 (17-235)||(3372773-3372991)
chr1 (320-411)||(6592536-6592627)
chr1 (320-369)||(3218549-3218598)
chr1 (15-122)||(3341308-3341417)
chr1 (320-369)||(6601788-6601837)
chr1 (320-367)||(2006414-2006461)
chr1 (320-367)||(2010503-2010550)
chr1 (320-367)||(2019716-2019763)
chr1 (139-195)||(6601625-6601681)
chr1 (320-357)||(2011923-2011960)
chr1 (148-189)||(2012073-2012114)
chr1 (76-189)||(2019876-2019989)
chr1 (145-189)||(2010663-2010707)
chr1 (139-195)||(6592370-6592426)
[»] chr4 (2 HSPs)
chr4 (27-189)||(21237664-21237826)
chr4 (319-379)||(21237477-21237537)
[»] chr5 (1 HSPs)
chr5 (142-448)||(17969734-17970037)
[»] chr2 (8 HSPs)
chr2 (21-424)||(20923374-20923774)
chr2 (2-186)||(20927202-20927386)
chr2 (1-186)||(20934586-20934771)
chr2 (1-186)||(20953124-20953309)
chr2 (305-455)||(39273915-39274065)
chr2 (80-190)||(39274180-39274290)
chr2 (324-391)||(20952928-20952995)
chr2 (324-455)||(20926942-20927073)


Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Complemental strand, 3340821 - 3340375
Alignment:
Q  8 tcaagcggggggcagccagatatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagccttcaaacg 107  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  3340821 tcaagcagggggcagccacatatcatgttttcaaaagcatcttgagtcattgtaacttcaaacaaagaaagacttttcaaattccggaagccttcaaacg 3340722  T
Q  108 ttgttggaggtttaagacaacaataattcagttctaaatgatgtaaactttgacaagagtataagcaccaaggtatcttatagcgttgttttaacctact 207  Q
    | |||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||| |||||||| ||||||||| ||||||||||| |    
T  3340721 tcgttggaggattaaggcaacaataattcagttctaaatgttgcaaactttgacaagagaataagcagcaaggtattttatagcgtggttttaacctaat 3340622  T
Q  208 gtccagcacaagctctttaatataccttttggatttctgaaaaatccaccaatcaatatcagccatagagttcacaccaatagtgaaatattgattggag 307  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3340621 gtccagcacaaactctttaatataccttttggatatctgaaaaatccactgatcaatatcagccatagagttcacaccaatagtgaaatattgattggag 3340522  T
Q  308 tctgagacctcaaacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataactgaagggtctttggaag 407  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  3340521 tccgagacctcaaacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctctcaataactgaagggtgtttggaag 3340422  T
Q  408 tttcagtagatacacatcgacgatcaaacacaagatctggtagagtg 454  Q
    |||||||||||||||||  ||||||||||||||||||||||| ||||    
T  3340421 tttcagtagatacacattcacgatcaaacacaagatctggtaaagtg 3340375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 2948178 - 2948625
Alignment:
Q  1 caatttctcaagcggggggcagccagatatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagcct 100  Q
    ||||||||| |||  |||||||||| |||||||||| |  ||| |||||||| ||||||||||   |  || ||||||| |||||| | |||||||||||    
T  2948178 caatttctctagcacggggcagccatatatcatgttattgaaagcatcttgactcattgtaacccgattcaaataaagaattttcatactccggaagcct 2948277  T
Q  101 tcaaacgttgttggaggtttaagacaacaataattcagttctaaatgatgtaaactttgacaagagtataagcaccaaggtatcttatagcgttgtttta 200  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||||||||||| ||| || ||| ||||| |  ||||||||||||||||||| |  |    
T  2948278 tcaaactttgttggaggtttaagccaacaataattcagatctaaatgatgtaaaccttggcaggagaataaggatgaaggtatcttatagcgttgatcaa 2948377  T
Q  201 acctactgtccagcacaagctctttaatataccttttggatttctgaaaaatccaccaatcaatatcagccatagagttcacaccaatagtgaaatattg 300  Q
    | | | |||||| ||||| ||||||||||| ||||  || |   |||  |||||||| ||||||||| ||||||| ||||||| ||||| |||  |   |    
T  2948378 aacaaatgtccaacacaaactctttaatatgccttccggttagatgacgaatccaccgatcaatatctgccatagcgttcacatcaataatgatgtcacg 2948477  T
Q  301 attggagtctgagacctcaaacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataactgaagggtct 400  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  2948478 ataggagtcagagacctcaaacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattctcaaaaacttgctctcaataactgaagggtct 2948577  T
Q  401 ttggaagtttcagtagatacacatcgacgatcaaacacaagatctggt 448  Q
    |||||| || |||||||||||||||||| |||||||||||||||||||    
T  2948578 ttggaaattgcagtagatacacatcgactatcaaacacaagatctggt 2948625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 3349702 - 3349253
Alignment:
Q  1 caatttctcaagcggggggcagccagatatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagcct 100  Q
    |||| |||||||| ||||||||||||| |||||||| |  ||| |||||||| ||||||||||   |  || |||||||||||||| |||||||||||||    
T  3349702 caatctctcaagcagggggcagccagacatcatgttattgaaagcatcttgagtcattgtaacccgattcaaataaagacttttcagattccggaagcct 3349603  T
Q  101 tcaaacgttgttggaggtttaagacaacaataattcagttctaaatgatgtaaactttgacaagagtataagcaccaaggtatcttatagcgttgtttta 200  Q
    |||||  |||||||||||||||| || ||||||||||| | |||||| ||||||| ||| || ||| ||||| |  |||||||| | |||||||| |  |    
T  3349602 tcaaaaattgttggaggtttaagccagcaataattcagatttaaatgttgtaaaccttggcaggagaataaggatgaaggtatcatttagcgttgatcaa 3349503  T
Q  201 acctactgtccagcacaagctctttaatataccttttggatttctgaaaaatccaccaatcaatatcagccatagagttcacaccaatagtgaaatattg 300  Q
    | ||| |||||| ||||| |||||||||||  |||  || |   |||| |||||||| |||||||||||   |||||| ||||  |||| ||| ||   |    
T  3349502 aactaatgtccaacacaaactctttaatatgtcttccggttagatgaagaatccaccgatcaatatcagttgtagagtacacattaataatgatatcacg 3349403  T
Q  301 attggagtctgagacctcaaacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataactgaagggtct 400  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| | |    
T  3349402 attggggtcggagacctcaaacttgttgattagcccagaatgaagtaaaagtacatgatcaataattctcaaaaacttgctctcaataactgaaggtttt 3349303  T
Q  401 ttggaagtttcagtagatacacatcgacgatcaaacacaagatctggtag 450  Q
      |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  3349302 agggaagtttcagtagatacacatagactatcaaacacaagatctggtag 3349253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 73 - 448
Target Start/End: Original strand, 9818692 - 9819067
Alignment:
Q  73 ataaagacttttcaaattccggaagccttcaaacgttgttggaggtttaagacaacaataattcagttctaaatgatgtaaactttgacaagagtataag 172  Q
    |||||||||||||  |||||| |||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||| ||| || ||| |||||    
T  9818692 ataaagacttttctgattccgaaagccttcaaacattgttggaggtttaagccaacaataattaagatctaaatgatgtaaaccttggcaggagaataag 9818791  T
Q  173 caccaaggtatcttatagcgttgttttaacctactgtccagcacaagctctttaatataccttttggatttctgaaaaatccaccaatcaatatcagcca 272  Q
     |  ||||||||||||||||||| |  || | | |||||| ||||| ||||||||||||| ||  || |   |||| |||||||  || |||||||||||    
T  9818792 gatgaaggtatcttatagcgttgatcaaaacaaatgtccaacacaaactctttaatatactttccggttagatgaacaatccactgattaatatcagcca 9818891  T
Q  273 tagagttcacaccaatagtgaaatattgattggagtctgagacctcaaacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaa 372  Q
    ||| ||||||| ||||| |||  |   ||| |||||  |||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||| ||    
T  9818892 tagcgttcacatcaataatgatgtcccgataggagttagagacctcaatcttgttgattggcccggaatgaagtaaaagtacatgatcaataattctcaa 9818991  T
Q  373 aaacttgctgtcaataactgaagggtctttggaagtttcagtagatacacatcgacgatcaaacacaagatctggt 448  Q
    |||||| || |||| ||| ||||||| || ||| ||| | |||||||||||||||| |||||||||||||||||||    
T  9818992 aaactttctctcaacaaccgaagggttttcggaggttgccgtagatacacatcgactatcaaacacaagatctggt 9819067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 29 - 406
Target Start/End: Complemental strand, 3362007 - 3361633
Alignment:
Q  29 atcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagccttcaaacgttgttggaggtttaagacaac 128  Q
    |||||||||||||||  ||||||| |||||||||| | |  ||  | |||||||||||| |||  |||||||||||||||||||||||||||||| ||||    
T  3362007 atcatgttttcaaaagaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaac 3361908  T
Q  129 aataattcagttctaaatgatgtaaactttgacaagagtataagcaccaaggtatcttatagcgttgttttaacctactgtccagcacaagctctttaat 228  Q
    |  | || | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  | ||||| | ||| |||||||| |||||||||    
T  3361907 agcattttaattctaaatgatgtaaactttgacaagagaataagcaccaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaat 3361808  T
Q  229 ataccttttggatttctgaaaaatccaccaatcaatatcagccatagagttcacaccaatagtgaaatattgattggagtctgagacctcaaacttgttg 328  Q
    |  ||||  || |   |||| ||||||||  | |||||| | ||||||  ||| ||   || ||| ||    || | ||||   || ||  |||||||||    
T  3361807 aggccttcgggttaggtgaataatccacctttgaatatctgtcatagaactcaaac---taatgagattacaatagtagtcgcggatctggaacttgttg 3361711  T
Q  329 attggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataactgaagggtctttggaa 406  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |  ||||| |||||||||| ||||    
T  3361710 attggcccataatgaagtaaaagtacatgatcaacaattctcaaaaacttgttattgataaccgaagggtcttgggaa 3361633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 3340971 - 3340856
Alignment:
Q  8 tcaagcggggggcagccagatatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagccttcaaacg 107  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||| ||||| | ||||||||||||||||||||||||||||||| |    
T  3340971 tcaagcagggggcagccagatatcatgttttcaaaagcatcttgagtcattctaactttagacaaagaaagacttttcaaattccggaagccttcaaatg 3340872  T
Q  108 ttgttggaggtttaag 123  Q
    ||||||||||||||||    
T  3340871 ttgttggaggtttaag 3340856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 3341271 - 3341156
Alignment:
Q  8 tcaagcggggggcagccagatatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagccttcaaacg 107  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||| | ||| | |||||||||||||||||||||| |||||||| |    
T  3341271 tcaagcagggggcagccagatatcatgttttcaaaagcatcttgagtcattctaactttaaacaaagaaagacttttcaaattccggaaaccttcaaatg 3341172  T
Q  108 ttgttggaggtttaag 123  Q
    ||||||||| ||||||    
T  3341171 ttgttggagctttaag 3341156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 3341121 - 3341007
Alignment:
Q  8 tcaagcggggggcagccagatatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagccttcaaacg 107  Q
    |||||| | ||||||||||||||||||||||||||  |||||||| ||||| ||||  |||||| | ||||||||||||||||||||||||||||||| |    
T  3341121 tcaagcagagggcagccagatatcatgttttcaaatgcatcttgagtcattctaacgacagacaaagaaagacttttcaaattccggaagccttcaaatg 3341022  T
Q  108 ttgttggaggtttaa 122  Q
    |||||||||||||||    
T  3341021 ttgttggaggtttaa 3341007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 324 - 443
Target Start/End: Original strand, 4323147 - 4323266
Alignment:
Q  324 tgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataactgaagggtctttggaagtttcagtagatacaca 423  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||   ||||||||| ||||||||| ||||| ||||| ||| |||||    
T  4323147 tgttgattggcccagaatgaagtaaaagtacatgatcaaccattttcgaaaacttgggctcaataactaaagggtcttgggaagcttcagcagacacaca 4323246  T
Q  424 tcgacgatcaaacacaagat 443  Q
    | | | ||||| ||||||||    
T  4323247 ttgtctatcaagcacaagat 4323266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 9820319 - 9820163
Alignment:
Q  1 caatttctcaagcggggggcagccagatatcatgttttcaaaatcatcttgaatcattgtaacttc-agacatataaagacttttcaaattccggaagcc 99  Q
    ||||||||| ||  ||||||||||| |||||||||| |  ||| |||||||| ||||| |||   | |  || |||||||||||| | ||| ||||||||    
T  9820319 caatttctctagaagggggcagccaaatatcatgttattgaaagcatcttgagtcattctaaacccgattcaaataaagactttttagatttcggaagcc 9820220  T
Q  100 ttcaaacgttgttggag--gtttaagacaacaataattcagttctaaatgatgtaaa 154  Q
    |||||||||||||||||  ||||||| |||||||||||||| |||||||||||||||    
T  9820219 ttcaaacgttgttggagaggtttaagccaacaataattcagatctaaatgatgtaaa 9820163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 320 - 407
Target Start/End: Complemental strand, 3372691 - 3372604
Alignment:
Q  320 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataactgaagggtctttggaag 407  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||||||| ||||||||| | |  |||||||||| || ||||||||    
T  3372691 aacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataactgaagtgtatttggaag 3372604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 407
Target Start/End: Complemental strand, 3378726 - 3378648
Alignment:
Q  329 attggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataactgaagggtctttggaag 407  Q
    |||||||||||||||||||||||||||||||| | |||||| ||||||||||| || ||||| |||||| ||| |||||    
T  3378726 attggcccagaatgaagtaaaagtacatgatcgataattctcaaaaacttgctctcgataaccgaagggccttgggaag 3378648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 3378976 - 3378863
Alignment:
Q  76 aagacttttcaaattccggaagccttcaaacgttgttggaggtttaagacaacaataat-tcagttctaaatgatgtaaactttgacaagagtataagca 174  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||||| | |||| ||| | || | ||||||| ||||||||||||||||| |||||||    
T  3378976 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacaacaatataagct-taaatgacgtaaactttgacaagagaataagca 3378878  T
Q  175 ccaaggtatcttata 189  Q
    ||| | |||||||||    
T  3378877 ccatgttatcttata 3378863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 2006674 - 2006580
Alignment:
Q  95 aagccttcaaacgttgttggaggtttaagacaacaataattcagttctaaatgatgtaaactttgacaagagtataagcaccaaggtatcttata 189  Q
    |||||||||| ||| | ||||||||||||  |||||||||  | |  || |||||||||||||||||||||  ||||||||||||||||||||||    
T  2006674 aagccttcaatcgtcgatggaggtttaagcaaacaataatataatgttagatgatgtaaactttgacaagaaaataagcaccaaggtatcttata 2006580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 4335037 - 4335102
Alignment:
Q  324 tgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataa 389  Q
    |||||||||| |||||||||| ||||||||||||||||||||||   ||||||||| |||||||||    
T  4335037 tgttgattggtccagaatgaactaaaagtacatgatcaacaatttgcaaaaacttgttgtcaataa 4335102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 3218247 - 3218359
Alignment:
Q  18 ggcagccagatatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagccttcaaacgttgttggagg 117  Q
    ||||||| ||||||| |||||||||| ||||||||  ||||||||| | | | |  | |||||||||||| |||  |||||||| |||||||||||||||    
T  3218247 ggcagccggatatcaagttttcaaaagcatcttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttgttggagg 3218346  T
Q  118 tttaagacaacaa 130  Q
    || || |||||||    
T  3218347 ttgaatacaacaa 3218359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 3372991 - 3372773
Alignment:
Q  17 gggcagccagatatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagccttcaaacgttgttggag 116  Q
    ||||||||||||||||||||||||||||||||||||  || |||||| ||   || || ||||  || ||  |||  ||| ||||||||||||||||||     
T  3372991 gggcagccagatatcatgttttcaaaatcatcttgagccagtgtaacctcttccagatgaagatattgcaggttcttgaaaccttcaaacgttgttggaa 3372892  T
Q  117 gtttaa---gacaacaataattcagttctaaatgatgtaaactttgacaagagtataagcaccaaggtatcttatagcgttgttttaacctactgtccag 213  Q
    ||||||   |||||||| |  | || | ||||||| ||||||||||||||||| |||| | | ||||||||||||| ||||  | ||||| |  || |||    
T  3372891 gtttaagttgacaacaaga--taagct-taaatgacgtaaactttgacaagagaataaactcaaaggtatcttataacgtttgtctaaccaaaagtgcag 3372795  T
Q  214 cacaagctctttaatatacctt 235  Q
    || ||||||||| ||| |||||    
T  3372794 cagaagctcttttatagacctt 3372773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 411
Target Start/End: Original strand, 6592536 - 6592627
Alignment:
Q  320 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataactgaagggtctttggaagtttc 411  Q
    ||||| |||||||| |||||| | ||||||||||||||||||| ||||||| ||| |||||| |  |||||| || ||||||| ||||||||    
T  6592536 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttc 6592627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 3218549 - 3218598
Alignment:
Q  320 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattct 369  Q
    ||||||||||| || ||||||||||||| |||||||||||||||||||||    
T  3218549 aacttgttgatcggtccagaatgaagtagaagtacatgatcaacaattct 3218598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 3341417 - 3341308
Alignment:
Q  15 gggggcagccagatatcatgttttcaaaatcat-cttgaatcattgtaacttcagacatataaagacttttcaaattccggaagccttcaa-acgttgtt 112  Q
    ||||||||| ||||||||||||||||||| |||  | || ||||| ||||  |||||| | ||||| | |||||||||||||||| ||||| | ||||||    
T  3341417 gggggcagctagatatcatgttttcaaaagcatgatggagtcattctaacgacagacaaagaaagagtattcaaattccggaagcgttcaagatgttgtt 3341318  T
Q  113 ggaggtttaa 122  Q
    ||||||||||    
T  3341317 ggaggtttaa 3341308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 6601788 - 6601837
Alignment:
Q  320 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattct 369  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| ||||||    
T  6601788 aactttttgattggcccagaatggagtaaaagtacatgatcaataattct 6601837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 367
Target Start/End: Complemental strand, 2006461 - 2006414
Alignment:
Q  320 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaatt 367  Q
    |||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  2006461 aacttgttgattggcccagaataaagtaaaagtacctgatcaataatt 2006414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 367
Target Start/End: Complemental strand, 2010550 - 2010503
Alignment:
Q  320 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaatt 367  Q
    ||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  2010550 aacttgttgattggcccggaataaagtaaaagtacatgatcaataatt 2010503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 367
Target Start/End: Complemental strand, 2019763 - 2019716
Alignment:
Q  320 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaatt 367  Q
    ||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  2019763 aacttgttgattggcccggaataaagtaaaagtacatgatcaataatt 2019716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 6601625 - 6601681
Alignment:
Q  139 ttctaaatgatgtaaactttgacaagagtataagcaccaaggtatcttatagcgttg 195  Q
    ||||||||||||||||| |||||||||  |||||||  ||||||| |||||||||||    
T  6601625 ttctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttg 6601681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 2011960 - 2011923
Alignment:
Q  320 aacttgttgattggcccagaatgaagtaaaagtacatg 357  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  2011960 aacttgttgattggcccataataaagtaaaagtacatg 2011923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 2012114 - 2012073
Alignment:
Q  148 atgtaaactttgacaagagtataagcaccaaggtatcttata 189  Q
    |||||| |||||||||||  ||||||||||||||||||||||    
T  2012114 atgtaagctttgacaagaaaataagcaccaaggtatcttata 2012073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 2019989 - 2019876
Alignment:
Q  76 aagacttttcaaattccggaagccttcaaacgttgttggaggtttaagacaacaataattcagttctaaatgatgtaaactttgacaagagtataagcac 175  Q
    |||||||||||| |||   |||||||||| ||| | ||||||||||||  ||||||||   |    || |||| |||| |||||||||||  ||||||||    
T  2019989 aagacttttcaagttcttaaagccttcaatcgtcgatggaggtttaagcaaacaataagataaacttagatgaagtaagctttgacaagaaaataagcac 2019890  T
Q  176 caaggtatcttata 189  Q
    ||||||||||||||    
T  2019889 caaggtatcttata 2019876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 2010707 - 2010663
Alignment:
Q  145 atgatgtaaactttgacaagagtataagcaccaaggtatcttata 189  Q
    |||| |||| |||||||||||  ||||||||||||||||||||||    
T  2010707 atgaagtaagctttgacaagaaaataagcaccaaggtatcttata 2010663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 6592370 - 6592426
Alignment:
Q  139 ttctaaatgatgtaaactttgacaagagtataagcaccaaggtatcttatagcgttg 195  Q
    |||||||||||| ||||||||||||||  |||| ||  ||||||| |||||||||||    
T  6592370 ttctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttg 6592426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 27 - 189
Target Start/End: Complemental strand, 21237826 - 21237664
Alignment:
Q  27 atatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagccttcaaacgttgttggaggtttaagaca 126  Q
    |||||| |||||| ||| |||||||| |||||||||||||   || | ||||||||| ||| |||| |||||||||||||||||||||||||||||| ||    
T  21237826 atatcaagttttcgaaagcatcttgagtcattgtaacttcgatcaaagaaagactttccaagttcctgaagccttcaaacgttgttggaggtttaagcca 21237727  T
Q  127 acaataattcagttctaaatgatgtaaactttgacaagagtataagcaccaaggtatcttata 189  Q
    ||||    | | |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21237726 acaacttgttaattctaaatgatgtaaactttgacaagagaataagcaccaaggtatcttata 21237664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 21237537 - 21237477
Alignment:
Q  319 aaacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttg 379  Q
    ||||||||  |||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  21237537 aaacttgtcaattgacccagaatgaagtagaagtacatgatcaacaattctcaaaaacttg 21237477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 142 - 448
Target Start/End: Complemental strand, 17970037 - 17969734
Alignment:
Q  142 taaatgatgtaaactttgacaagagtataagcaccaaggtatcttatagcgttgttttaacctactgtccagcacaagctctttaatataccttttggat 241  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||| |||    |  || | |||||| |||||||||||||| | | |||   | |    
T  17970037 taaatgatgtaaactttgataagaaaataagcaccaaggtatcttatagagttcccctgcccaaatgtccaacacaagctctttaacagatcttccagtt 17969938  T
Q  242 ttctgaaaaatccaccaatcaatatcagccatagagttcacaccaatagtgaa-atattgattggagtctgagacctcaaacttgttgattggcccagaa 340  Q
       |||| |||||||| ||||| |||||||||||||||||||||||  | ||  | ||| |   ||||| | ||| |||||||||||||||||||| |||    
T  17969937 agatgaagaatccaccgatcaacatcagccatagagttcacaccaag-gagatcacattca---gagtcagtgacttcaaacttgttgattggccctgaa 17969842  T
Q  341 tgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataactgaagggtctttggaagtttcagtagatacacatcgacgatcaaacacaa 440  Q
    ||||||||||||||||||||||  ||||| ||||||||||  || |||||||||  ||||| ||||| | |||||||||||||| | | |||||||||||    
T  17969841 tgaagtaaaagtacatgatcaatgattctcaaaaacttgccctcgataactgaaaagtcttcggaagctacagtagatacacattgtctatcaaacacaa 17969742  T
Q  441 gatctggt 448  Q
    ||||||||    
T  17969741 gatctggt 17969734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 424
Target Start/End: Complemental strand, 20923774 - 20923374
Alignment:
Q  21 agccagatatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagccttcaaacgttgttggaggttt 120  Q
    |||||||||||| |||||||||| |||||| |  || ||||||||    ||  | |||||||||||| |||  ||||||||||||| | | |||||||||    
T  20923774 agccagatatcaagttttcaaaagcatctttagccactgtaacttgttccaattgaagacttttcaagttcatgaagccttcaaacatcgctggaggttt 20923675  T
Q  121 aagacaacaataattcagttctaaatgatgtaaactttgacaagagtataagcaccaaggtatcttatagcgttgttttaacctactgtccagcacaagc 220  Q
    |||  || || ||  ||  | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |  |||| | |||||||| ||||     
T  20923674 aagcgaagaacaaaacaaatttaaatgatgtaaactttgacaagagaataagcaccaaggtatgttatagcgttgctcgaaccaaatgtccagctcaaga 20923575  T
Q  221 tctttaatataccttttggatttctgaaaaatccaccaatcaatatcagccatagagttcacaccaatagtgaaatattgattggagtctgagacctcaa 320  Q
    | ||||||| ||||| | | |   |||| |||||||| ||||| ||| |||| |||  ||| |||||   ||||||    |  | | || |||| ||  |    
T  20923574 tttttaatagaccttcttgttagatgaagaatccaccgatcaacatctgccacagatatcataccaa---tgaaatcacaaccgaaatcagagatcttga 20923478  T
Q  321 acttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataactgaagggtctttggaagtttcagtagatac 420  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | || | ||||||| | || ||||| ||||| |||| ||||  | ||| ||||||    
T  20923477 acttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaaggatcttcggaaactgcagcagatac 20923378  T
Q  421 acat 424  Q
    ||||    
T  20923377 acat 20923374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 20927386 - 20927202
Alignment:
Q  2 aatttctcaagcggggggcagccagatatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagcctt 101  Q
    ||||| |||||| ||||||||||||||||||  ||||| ||||||| ||||  || ||| |||  |  || || |||||| |||||| ||   |||| ||    
T  20927386 aatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactcttaaagcttt 20927287  T
Q  102 caaacgttgttggaggtttaagacaacaataattcagttctaaatgatgtaaactttgacaagagtataagcaccaaggtatctt 186  Q
    ||||||| ||||||||||||||||||||  |||  | || ||||||||||||||||||||||||| |||||||||||||||||||    
T  20927286 caaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 20927202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 20934771 - 20934586
Alignment:
Q  1 caatttctcaagcggggggcagccagatatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagcct 100  Q
    |||||| |||||| |||||||||||||||||| |||||||||| ||||||||  || ||  || | |  || || ||||||||||||  |||  ||||||    
T  20934771 caatttttcaagcagggggcagccagatatcaagttttcaaaagcatcttgagccactgctacatgattcagatcaagacttttcaagctcctaaagcct 20934672  T
Q  101 tcaaacgttgttggaggtttaagacaacaataattcagttctaaatgatgtaaactttgacaagagtataagcaccaaggtatctt 186  Q
    | ||||   ||||||||||||||||||||  |||  | ||  |||||||||||||||||||||||| |||||||||||||||||||    
T  20934671 ttaaacaacgttggaggtttaagacaacagaaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 20934586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 20953309 - 20953124
Alignment:
Q  1 caatttctcaagcggggggcagccagatatcatgttttcaaaatcatcttgaatcattgtaacttcagacatataaagacttttcaaattccggaagcct 100  Q
    |||||| |||||| | ||||||||||| |||| |||||||||| ||||||||  || ||| |||  |  || || |||||| |||||  ||   ||||||    
T  20953309 caatttttcaagcagagggcagccagagatcaagttttcaaaagcatcttgagccactgttactagattcagatcaagactcttcaacctcttaaagcct 20953210  T
Q  101 tcaaacgttgttggaggtttaagacaacaataattcagttctaaatgatgtaaactttgacaagagtataagcaccaaggtatctt 186  Q
    |||||||| ||||||||||||||||||||  |||  | ||  |||||||||||||||||||||||| |||||||||||||||||||    
T  20953209 tcaaacgtcgttggaggtttaagacaacaccaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 20953124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 305 - 455
Target Start/End: Complemental strand, 39274065 - 39273915
Alignment:
Q  305 gagtctgagacctcaaacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataactgaagggtctttgg 404  Q
    ||||| |||| ||| ||||||||||| || ||||| ||||||||||||||||||||||||||| | |||| |||| | |||||| || ||||||||| ||    
T  39274065 gagtcagagaactcgaacttgttgataggtccagagtgaagtaaaagtacatgatcaacaattttcaaaagcttgttctcaatatctaaagggtcttggg 39273966  T
Q  405 aagtttcagtagatacacatcgacgatcaaacacaagatctggtagagtgt 455  Q
    ||  |  || ||| ||||| || | |||||||||||||| |||||| ||||    
T  39273965 aacctctagcagagacacaacgtctatcaaacacaagatttggtagtgtgt 39273915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 39274290 - 39274180
Alignment:
Q  80 cttttcaaattccggaagccttcaaacgttgttggaggtttaagacaacaataattcagttctaaatgatgtaaactttgacaagagtataagcaccaag 179  Q
    |||||||| |||| |||||||||||| ||||||||||||||||| |||||| ||  ||  | |||| | || ||||||||||| ||| ||||||||||||    
T  39274290 cttttcaagttcctgaagccttcaaatgttgttggaggtttaagccaacaacaagccaactttaaacgttgcaaactttgacaggagaataagcaccaag 39274191  T
Q  180 gtatcttatag 190  Q
    |||||||||||    
T  39274190 gtatcttatag 39274180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 391
Target Start/End: Complemental strand, 20952995 - 20952928
Alignment:
Q  324 tgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataact 391  Q
    |||||||||||||||||||||||||||||||||||||||||||| | || ||||| || |||||||||    
T  20952995 tgttgattggcccagaatgaagtaaaagtacatgatcaacaattttcaataacttcctctcaataact 20952928  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 324 - 455
Target Start/End: Complemental strand, 20927073 - 20926942
Alignment:
Q  324 tgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctgtcaataactgaagggtctttggaagtttcagtagatacaca 423  Q
    |||||||||||||| ||||||||||||| ||||||||| ||| | | |||||||| ||  | |||||| |  |||||||||||| | ||| ||| |||||    
T  20927073 tgttgattggcccataatgaagtaaaaggacatgatcagcaaatttcaaaaacttcctagcgataactaacaggtctttggaagctgcagcagagacaca 20926974  T
Q  424 tcgacgatcaaacacaagatctggtagagtgt 455  Q
    | ||| |||||| ||||||| |||||| ||||    
T  20926973 ttgactatcaaagacaagatttggtagtgtgt 20926942  T

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