View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12088_high_1 (Length: 621)

Name: NF12088_high_1
Description: NF12088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12088_high_1
NF12088_high_1
[»] chr6 (10 HSPs)
chr6 (22-603)||(4819067-4819650)
chr6 (448-603)||(10779288-10779444)
chr6 (44-158)||(4806155-4806268)
chr6 (456-593)||(4829301-4829439)
chr6 (457-576)||(4803905-4804026)
chr6 (456-574)||(4797949-4798069)
chr6 (76-154)||(4824140-4824218)
chr6 (483-574)||(4835691-4835791)
chr6 (237-324)||(4806803-4806890)
chr6 (446-563)||(4814910-4815029)
[»] chr1 (1 HSPs)
chr1 (447-540)||(18937574-18937667)


Alignment Details
Target: chr6 (Bit Score: 501; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 22 - 603
Target Start/End: Original strand, 4819067 - 4819650
Alignment:
Q  22 gaccacattgttcatgaaccgactcttctgataatcgttgatcttgataacttttttctaatattcagaaacttcaaataaaccattatacacgcaaatg 121  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4819067 gaccacattgttcgtgaaccgactcttctgataatcgttgatcttgataacttgtttctaatattcagaaacttcaaataaaccattatacacgcaaatg 4819166  T
Q  122 taaaccaggttcagtatatctttttggaagcaagaactgctctgaaaccaatg--cttacattcaagaacttagtctgattcatgtgtaggtgcttacat 219  Q
    ||||||||||||||||||||||||||||||||||||| |||  ||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  4819167 taaaccaggttcagtatatctttttggaagcaagaaccgct--gaaaccaatgtgcttgcattcaagaacttagtctgattcatgtgtcggtgcttacat 4819264  T
Q  220 ttcattgattgatgaagttctttaagctaagaaagttttggcagccaacttagaaaattttgctgaccaaagatttattgtcaagatttttccctcagga 319  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4819265 ttcattgatagatgaagttctttaagctaagaaagtattggcagccaacttagaaaattttgctgaccaaagatttattgtcaagatttttccctcagga 4819364  T
Q  320 atccaacttttttataatgtttgaacagccatttcacattccgtgatttccctgactcatccgagccgcgctctcccaataagtcaaatttgcggcgttt 419  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  4819365 atccaacttttttataatgtttgaacagccatttcaccttccgtgatttccctgactcatccgagccacactctcccaataagtcaaatttgcggcgttt 4819464  T
Q  420 caagctccaaagaccaagactgtcgacgtgttgacggatacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctct 519  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4819465 caagctccaaagaccaaaactgtcgacgtgttgacggatacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctct 4819564  T
Q  520 tgccgcgacattgctttact--atcatcaagaccgggctcatagataggaagttgattgttgtgccacactgcaatacgcgatttc 603  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4819565 tgccgcgacattgctttactacatcatcaagaccggactcatagataggaacttgattgttgtgccacactgcaatacgcgatttc 4819650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 448 - 603
Target Start/End: Original strand, 10779288 - 10779444
Alignment:
Q  448 tgttgacggatacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatc 545  Q
    |||||||  ||||| |||| |||| | |||| ||||||||||||||||| | | |||||||||||| | |||||| |||||||| ||||||||  | |||    
T  10779288 tgttgacaaatacaaacacaattttagcttcatagacatgtttttcaacatcagtgctgaagaaaagg-tcttgctgcgacattactttactacataatc 10779386  T
Q  546 aagaccgggctcatagataggaagttgattgttgtgccacactgcaatacgcgatttc 603  Q
    ||||    ||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  10779387 aagattttgctcatagataggaagttgattgttgttccacactgcaatgcgcgatttc 10779444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 4806155 - 4806268
Alignment:
Q  44 ctcttctgataatcgttgatcttgataacttttttctaatattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctt 143  Q
    ||||||| ||||||||||||||| ||||||| |||| ||||||||| ||||||   |||| ||||| |||| |||||| |||||||||| | ||||||||    
T  4806155 ctcttctaataatcgttgatcttcataacttatttccaatattcagcaacttctggtaaatcattacacacacaaatgaaaaccaggtt-aatatatctt 4806253  T
Q  144 tttggaagcaagaac 158  Q
    || ||||| ||||||    
T  4806254 ttcggaagaaagaac 4806268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 456 - 593
Target Start/End: Original strand, 4829301 - 4829439
Alignment:
Q  456 gatacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccgg 553  Q
    |||||| ||||||| ||| |||||||||||| ||||| ||| | |  ||||||||||| | ||||||| ||| |||||||| |||  ||||||||||| |    
T  4829301 gatacaaacactatgtcagcttcgtagacatattttttaacatcatagctgaagaaaa-gttcttgccacgaaattgctttgctacatcatcaagaccag 4829399  T
Q  554 gctcatagataggaagttgattgttgtgccacactgcaat 593  Q
    |||| ||||| |||||||||| ||||| ||||| ||||||    
T  4829400 gctcgtagatgggaagttgatggttgttccacagtgcaat 4829439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 576
Target Start/End: Original strand, 4803905 - 4804026
Alignment:
Q  457 atacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccggg 554  Q
    ||||| |||| || ||| |||| ||||||||||||||||| | | || |||||| || |  |||||  ||||||||||||||||  ||||||| ||| ||    
T  4803905 atacaaacacaatgtcagcttcatagacatgtttttcaacatcagtgttgaagacaaggtacttgcatcgacattgctttactacatcatcaatacctgg 4804004  T
Q  555 ctcatagataggaagttgattg 576  Q
    ||||||||||||||||||||||    
T  4804005 ctcatagataggaagttgattg 4804026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 456 - 574
Target Start/End: Complemental strand, 4798069 - 4797949
Alignment:
Q  456 gatacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttact--atcatcaagaccgg 553  Q
    |||||| ||||| | ||| |||| | ||||||||||| ||| | | |||||||||||| | ||||||||||| |||||||||||  |||||||||||| |    
T  4798069 gatacaaacactgtgtcagcttcatggacatgttttttaacatcagtgctgaagaaaaggttcttgccgcgatattgctttactacatcatcaagacctg 4797970  T
Q  554 gctcatagataggaagttgat 574  Q
    | |||||||| | ||||||||    
T  4797969 gttcatagatggcaagttgat 4797949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 4824140 - 4824218
Alignment:
Q  76 tttctaatattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctttttggaagcaa 154  Q
    |||| ||||||||||||||||   |||| ||| | || | ||||||||||||||||||| |||||| ||||||||||||    
T  4824140 tttccaatattcagaaacttctggtaaaacatgacactcacaaatgtaaaccaggttcaatatatccttttggaagcaa 4824218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 574
Target Start/End: Original strand, 4835691 - 4835791
Alignment:
Q  483 acatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta---------tcatcaagaccgggctcatagataggaagttga 573  Q
    ||||||||||  || | |||||||||||||| | |||| | |||||||||||||||||         ||||||||| |||||||||||||||||||||||    
T  4835691 acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcattcatcaagatcgggctcatagataggaagttga 4835790  T
Q  574 t 574  Q
    |    
T  4835791 t 4835791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 324
Target Start/End: Original strand, 4806803 - 4806890
Alignment:
Q  237 ttctttaagctaagaaagttttggcagccaacttagaaaattttgctgaccaaagatttattgtcaagatttttccctcaggaatcca 324  Q
    |||||| ||| |||||||  || ||||| | |||||||| || |  ||||||| ||||| ||||||||||||||||||||||| ||||    
T  4806803 ttctttgagccaagaaagcattagcagctatcttagaaagttctattgaccaacgatttgttgtcaagatttttccctcaggagtcca 4806890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 563
Target Start/End: Original strand, 4814910 - 4815029
Alignment:
Q  446 cgtgttgacggatacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttact--atca 543  Q
    |||||||||||||||| |  |||| ||||  || || |||||||||||||| | ||| |  ||||||| | |||| | || ||||||||||| |  ||||    
T  4814910 cgtgttgacggatacaaaacctatgtcaaaatcataaacatgtttttcaacatcaattccaaagaaaaggttcttacagcaacattgctttaatacatca 4815009  T
Q  544 tcaagaccgggctcatagat 563  Q
    |||||| |||||||||||||    
T  4815010 tcaagatcgggctcatagat 4815029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 447 - 540
Target Start/End: Original strand, 18937574 - 18937667
Alignment:
Q  447 gtgttgacggatacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta 540  Q
    |||||||||||||||   || || ||||||||||||| ||| |||||||| | |||||| ||||||| | | |||||| |||||| ||||||||    
T  18937574 gtgttgacggatacaataacaatgtcaacttcgtagaaatgcttttcaacatcaatgctaaagaaaaggtttttgccgtgacattactttacta 18937667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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