View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12088_high_3 (Length: 300)
Name: NF12088_high_3
Description: NF12088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12088_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 271
Target Start/End: Original strand, 7902820 - 7903056
Alignment:
| Q |
33 |
tagcagccctcaggaggtgcaaacaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgctcccacagaaat |
132 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902820 |
tagctgccctcaggaggtgcaaccaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgctcccacagaaat |
7902919 |
T |
|
| Q |
133 |
accaaagttttctattatttgagtacaggataatggtcatatgtcttgagttctgatttgcatgactttacttatgttgatactggtgtccactttgtac |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
7902920 |
accaaagttttctattatttgagtacaggataatggtcatatgtc-tgagttctgatttgcatgactttacttatgttaatactggcgtgcactttgtac |
7903018 |
T |
|
| Q |
233 |
ttatcatttcaaaaactttgatcagacttggttaccaaa |
271 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7903019 |
ttgtcatttc-gaaactttgatcagacttggttaccaaa |
7903056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 7913225 - 7913366
Alignment:
| Q |
21 |
agtctgatgctctagcagccctcaggaggtgcaaacaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7913225 |
agtctgatgctctagcagccctcaggaggtgcaaccaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctgc |
7913324 |
T |
|
| Q |
121 |
tc-----ccacagaaataccaaagttttctattatttgagta |
157 |
Q |
| |
|
|| | ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
7913325 |
tctgctcctacaaaaatacccaagttttctattatttgagta |
7913366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 7913384 - 7913498
Alignment:
| Q |
151 |
ttgagtacaggataatggtcatatgtcttgagttctgatttgcatgactttacttatgttgatactggtgtccactttgtacttatcatttcaaaaactt |
250 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
7913384 |
ttgaatacaggataatgatcatatgtcc-gagttctgatttgcatgactttacttatgttaatactggtgtgcactttgtacttgtcatttc-gaaactt |
7913481 |
T |
|
| Q |
251 |
tgatcagacttggttac |
267 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7913482 |
tgatcagacttggttac |
7913498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 7896334 - 7896435
Alignment:
| Q |
20 |
cagtctgatgctctagcagccctcaggaggtgcaaacaaatgaagctttatggaaagacattgcaaattgagcttgttggaacaactttggttacccctg |
119 |
Q |
| |
|
|||||||| ||| |||| || |||| ||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
7896334 |
cagtctgaggctttagccgctctcaagaggtacaacaatatgaagcttgatggaaagacattgcaaattgagcttgttggaacaagtttggttactcctg |
7896433 |
T |
|
| Q |
120 |
ct |
121 |
Q |
| |
|
|| |
|
|
| T |
7896434 |
ct |
7896435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University