View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12088_low_2 (Length: 557)
Name: NF12088_low_2
Description: NF12088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12088_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 39 - 549
Target Start/End: Complemental strand, 49698957 - 49698446
Alignment:
| Q |
39 |
caagaaattaacttactaattaagaacaaaatgattagtttatacggtttcacgcagatataagaattatataacaaaaattaataac-aagcatacctg |
137 |
Q |
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| T |
49698957 |
caagaaattaacttactaattaagaacaaaatgattagtttatacggtttcacgcagatataagaattatataacaaaaattaataacgaagcatacctg |
49698858 |
T |
|
| Q |
138 |
tagcgacggtcattgggggagatggttcttcgacggagtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccggtgaggctgt |
237 |
Q |
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| T |
49698857 |
tagcgacggtcattgggggagatggttcttcgacggagtttggttcttttggctccgaaatcgcctagaggcggaagtggagctccgccagtgaggctgt |
49698758 |
T |
|
| Q |
238 |
acatgctgccatcatcgtgttccgggagaattccatctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtg |
337 |
Q |
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| T |
49698757 |
acatgctgccatcatcgtgttccgggagaattccatctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtg |
49698658 |
T |
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| Q |
338 |
gctttcatacatcatttttgcacaccgtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagcta |
437 |
Q |
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| T |
49698657 |
gctttcatacatcatttttgcacaccgtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagcta |
49698558 |
T |
|
| Q |
438 |
gctaactttgttcaatcattatatgattaatcaccatgcaacactagcttctttattaattctctggagatggaatttgtgtggtattgtatggtgttaa |
537 |
Q |
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| T |
49698557 |
gctaactttgttcaatcattatatgattaatcaccatgcaacaccagcttctttattaattctctggagatggaatttgtgtggtattgtatggtgttaa |
49698458 |
T |
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| Q |
538 |
ttgcttcttctc |
549 |
Q |
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| T |
49698457 |
ttgcttcttctc |
49698446 |
T |
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