View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12088_low_3 (Length: 408)
Name: NF12088_low_3
Description: NF12088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12088_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 42703618 - 42703990
Alignment:
| Q |
19 |
catcaggtctagtaacaacgaaggcgaaaacgaggatgatgagtagaagagcgattaaaagtgccatagcaaaaaggtaaagtgctaagagaccttcttt |
118 |
Q |
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| T |
42703618 |
catcaggtctagtaacaacgaaggcgaaaacgaggatgatgagtagaagagcgattaaaagtgccatagcaaaaaggtaaagtgctaagagaccttcttt |
42703717 |
T |
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| Q |
119 |
gttataataagcacctacaaaaccagttaaagcaacgaggaagacaaggatgccgactatgacaatgggccatcggaaattggctatgcattcgttgtct |
218 |
Q |
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| T |
42703718 |
gttataataagcacctataaaaccagttaaagcaacgaggaagacaaggatgccgattatgacaatgggccatcggaaattggctatgcattcgttgtct |
42703817 |
T |
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| Q |
219 |
ggttttgaagctagccaaattcctgaagctatgattggtattgaggctaatattgctatgatgtttagaactgcggttatgttgttgcttacacccatca |
318 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42703818 |
ggttttgaagctagccaaattccggaagctatgattggtattgaggctaatattgctatgatgtttagaactgcggttatattgttgcttacacccatca |
42703917 |
T |
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| Q |
319 |
caggtatcagttaccactgcctttgttttgctatatttgagttttggtgaaagtgctgaatttgagcagagtg |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42703918 |
caggtatcagttaccactgcctttgttttgctatatttgagttttggtgaaagtgctgaatttgagcagagtg |
42703990 |
T |
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