View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12088_low_5 (Length: 206)
Name: NF12088_low_5
Description: NF12088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12088_low_5 |
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| [»] chr4 (4 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 19799879 - 19800074
Alignment:
| Q |
17 |
agggaaagcatttgaactatcattgtgtaacttgatagatggatcagaaggtgtagtgactggtttagtacaaagaagaccataatcttgtagtaaatcc |
116 |
Q |
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| T |
19799879 |
agggaaagcatttgaactatcattgtgtaacctgatagatggatcagaaggtgtagtgtctggtttagtacaaaaaagaccataatcttgtagtaaatcc |
19799978 |
T |
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| Q |
117 |
aaacaatactttctctgacatagagagaaataccactttgtgaataagcaacttcaagtcc--------atttgagggtaccaagatctttgattttg |
206 |
Q |
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| T |
19799979 |
aaacagtactttctctgacat--agagaaataccactttgggaataagcaacttcaagtcctaagaaatatttgagggtaccaagatctttaattttg |
19800074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 8121641 - 8121837
Alignment:
| Q |
17 |
agggaaagcatttgaactatcattgt--gtaacttgatagatggatcagaaggtgtagtgactggtttagtacaaagaagaccataatcttgtagtaaat |
114 |
Q |
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| T |
8121641 |
agggaaagcatttgaactatcattatatgtaacttgatagatgggtcagaaggtg--gtaactggtttggaaccaagaagccccgagtcttgcaataaat |
8121738 |
T |
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| Q |
115 |
ccaaacaatactttctctgacatagagagaaataccactttgtgaataagcaacttcaagtcc---------atttgagggtaccaagatctttgatttt |
205 |
Q |
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| T |
8121739 |
ccagacaatactttctctgacat--agagaaatgccactttgggaatgagcaacttcaagtcctaaaaaaatatttgagggtaccaagatctttgatttt |
8121836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 17131410 - 17131263
Alignment:
| Q |
28 |
ttgaactatcattgtgtaacttgatagatggatcagaaggtgtagtgactggtttagtacaaagaagaccataatcttgtagtaaatccaaacaatactt |
127 |
Q |
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| T |
17131410 |
ttgaactatcattgtgtaatttgatggaaggatctgatggtgtagtaaccggtttggaacccagaagacctgaatcatgtaacaaatccagacaatattt |
17131311 |
T |
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| Q |
128 |
tctctgacatagagagaaataccactttgtgaataagcaacttcaagtcc |
177 |
Q |
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| T |
17131310 |
tctctggcat--agagaaataccaccttgtgaatgagcaacttcaagtcc |
17131263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 14040623 - 14040480
Alignment:
| Q |
29 |
tgaactatcattgtgtaacttgatagatggatcagaaggtgtagtgactggtttagtacaaagaagaccataatcttgtagtaaatccaaacaatacttt |
128 |
Q |
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| T |
14040623 |
tgaactatcattgtgtaacttgattgagggatcagaaggtgtagtaacaggttttgagccaagcaatcctaaatcatgcaataaatccagacaatatttt |
14040524 |
T |
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| Q |
129 |
ctctgacatagagagaaataccactttgtgaataagcaacttcaag |
174 |
Q |
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| T |
14040523 |
ctttgac--acaaagaaataccactttgagaatgagcaacttcaag |
14040480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 19914657 - 19914841
Alignment:
| Q |
25 |
catttgaactatcattgtgtaacttgatagatggatcagaaggtgtagtgactggtttagtacaaagaagaccataatcttgtagtaaatccaaacaata |
124 |
Q |
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| T |
19914657 |
catttggactatcattatgtaacttaatagatgggtcag---gtgtagtgactggtttagaaccaaggaaacctgaatcttgcagtaaatccaaacaata |
19914753 |
T |
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| Q |
125 |
ctttctctgacatagagagaaataccactttgtgaataagcaacttcaagtcc--------atttgagggtaccaagatctttgattttg |
206 |
Q |
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| T |
19914754 |
ctttctctgacat--agagaaataccactctgagaatgagcaacttcaagtcctaaaaaatatttgagggtaccaagatctttgattttg |
19914841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 34978332 - 34978462
Alignment:
| Q |
24 |
gcatttgaactatcattgtgtaacttgatagatggatcagaaggtgtagtgactggtttagtacaaagaagaccataatcttgtagtaaatccaaacaat |
123 |
Q |
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| T |
34978332 |
gcattttaattatcattatgtaacttgatagatggatcagaaggtgtagtgattggtttagaaccaaggagacatgaatcttgtaataagtccagacaat |
34978431 |
T |
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| Q |
124 |
actttctctgacatagagagaaataccactttg |
156 |
Q |
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| T |
34978432 |
actttctatg--atatagagaaataccactttg |
34978462 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 1529294 - 1529440
Alignment:
| Q |
29 |
tgaactatcattgtgtaacttgatagatggatcagaaggtgtagtgactggtttagtacaaagaagaccataatcttgtagtaaatccaaacaatacttt |
128 |
Q |
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| T |
1529294 |
tgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggatacctgaatcatgcagcaaatccaaacaatatttt |
1529393 |
T |
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| Q |
129 |
ctctgacatagagagaaataccactttgtgaataagcaacttcaagtcc |
177 |
Q |
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| T |
1529394 |
ctttgacat--aaagaaatgccactgtgggaatgagcaacttgaagtcc |
1529440 |
T |
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