View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12089_low_1 (Length: 1131)
Name: NF12089_low_1
Description: NF12089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12089_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-145; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 22 - 331
Target Start/End: Complemental strand, 15633757 - 15633449
Alignment:
| Q |
22 |
tcagaagttaacaaatacaatggatcttgtgaccattttccgaacacaaaaatggatgacgagcgacatgtgaagttataattgaagccttgaatgcata |
121 |
Q |
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| T |
15633757 |
tcagaagttaacaaatacaatggaccttgtgaccattttccaaacacaaaaatggatgacgagcgacatgtgaagttataattgaagccttgaatgctta |
15633658 |
T |
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| Q |
122 |
gaatcagttttgaggatatattataagaatatctgatgaagtctaatcccaacacaagtcttttaaacttgatatctttcttaatattatgattgatcgt |
221 |
Q |
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| T |
15633657 |
gaatcagttttgaggatatattataagaatatctgatgaagtctaat-ccaacacaaatattttaaacttgacatctttcttaatattatgattaatcgt |
15633559 |
T |
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| Q |
222 |
ttcaaacaatcaaccaaaccctttttcttagaatacaataaattgttaaacggttagaaaattaccaagtccttatggatatgataatctgacatacttt |
321 |
Q |
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| T |
15633558 |
ttcaaacaatcaaccaaaccctttttcttagaatacaaaaaattgttaaacggttagaaaattaccaagtccttatggatatgataatcttaaatacttt |
15633459 |
T |
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| Q |
322 |
gataccttta |
331 |
Q |
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| T |
15633458 |
gataccttta |
15633449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 432 - 503
Target Start/End: Complemental strand, 15614248 - 15614177
Alignment:
| Q |
432 |
ttattctataaaaccctagccgtctttatcgttttgattatctctttctctattttgcattgttcttgttaa |
503 |
Q |
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| T |
15614248 |
ttattctatgaaaccctagttgtctttatcgttttgattatctctttctctattttgcattgttcttgttaa |
15614177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 15585080 - 15584981
Alignment:
| Q |
213 |
attgatcgtttcaaacaatcaaccaaaccctttttcttagaatac-aataaattgttaaacggttagaaaattaccaagtccttatggatatgataatct |
311 |
Q |
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| T |
15585080 |
attgattgtttcaaacaatcaatcaagccctttttcttagaatacaaaaaaattgttaaacaactagaaaattatcaagtacctatgaatatgataatct |
15584981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 15614361 - 15614312
Alignment:
| Q |
349 |
tgttagataataaagtatt-tgcttaagttattgg-cctttatattagca |
396 |
Q |
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| T |
15614361 |
tgttagataataaagtattgggcttaagttattggacctttatattagca |
15614312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 349 - 393
Target Start/End: Original strand, 50294658 - 50294702
Alignment:
| Q |
349 |
tgttagataataaagtatttgcttaagttattggcctttatatta |
393 |
Q |
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| T |
50294658 |
tgttagatgataaagtattggcttaagttattgacctttatatta |
50294702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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