View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12089_low_2 (Length: 395)
Name: NF12089_low_2
Description: NF12089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12089_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 50410600 - 50410972
Alignment:
| Q |
1 |
ataattgaatcctagaatgaacaacagcatgagaatgcaaacactgaccaatgccaaggaagaaaagatccagcaaagtaactggaggttgatttatgat |
100 |
Q |
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| T |
50410600 |
ataattgaatcctagaatgaacaacagcatgagaatgcaaacactgaccaatgccaaggaagaaaagatccagcaaagtaactggaggttgatttatgat |
50410699 |
T |
|
| Q |
101 |
tctgaaaactatcccctcttccttgagtgaaagatgaacaatctttagtcaacagtgttgacttattagccatcatattgttcacaaacatcgactcttg |
200 |
Q |
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| T |
50410700 |
tctgaaaactatcccctcttccttgagtgaaagatgaacaatctttagtcaacaatgttgacttattagccatcatattgttcacaaacatcgacccttg |
50410799 |
T |
|
| Q |
201 |
agtcttcataaactacagaataaattataatcataacaaacaaattaatcattaaacacatgcatcactgctgccacaatgtcacttgtaatatcaatta |
300 |
Q |
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| T |
50410800 |
agtcttcataaactacagaataaattataatcataacaaacaaattaatcattaaacacatgcatcactgctgccacaatgtcacttgtaatatcaatta |
50410899 |
T |
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| Q |
301 |
ttgagacagaaatgctatttgaaaattacacatgagaggatccattccagtaattaaaagcataaagttgaaa |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50410900 |
ttgagacagaaatgctatttgaaaattacacatgagaggatccattccagtaattaaaagcataaagttgaaa |
50410972 |
T |
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