View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12090_high_7 (Length: 364)
Name: NF12090_high_7
Description: NF12090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12090_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 34825457 - 34825112
Alignment:
| Q |
18 |
tatgtatcaaccaaacacaaacacaaacataacacaattcagtttcaaaacagaacaagaatctctgttctattcttcactacaaaacagttcttacctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34825457 |
tatgtatcaaccaaacacaaacacaaacataacacaattcagtttcaaaacagaacaagaatctctgttctattcttcactacaaaacagttcttacctt |
34825358 |
T |
|
| Q |
118 |
acccaacaccctgaacaagcacacctcttcttcctccctttctcatcagacacctccacgcgctccctcgcgcgtttcatctcacgcatccgtaacgatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34825357 |
acccaacaccctgaacaagcacacctcttcttcctccctttctcatcagacacctccacgcgctcgctcgcgcgtttcatctcacgcatccgtaacgatt |
34825258 |
T |
|
| Q |
218 |
ttccttactggaaccgttccctcggcgctgatcatttttatctgtcctgcgacggaatttcgcatgtaaacgaccggaacatcgttgagctaaagaaaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34825257 |
ttccttactggaaccgttccctcggcgctgatcatttttatctttcctgcgacggaatttcgcacgtaaacgaccggaacatcgttgagctaaagaaaaa |
34825158 |
T |
|
| Q |
318 |
cgctattcagatcgcgtgtttccccacacgccatcgtagcttcatc |
363 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34825157 |
cgctattcagatcgcgtgtttccccacgcgccatcgtagcttcatc |
34825112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University