View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12090_high_8 (Length: 304)

Name: NF12090_high_8
Description: NF12090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12090_high_8
NF12090_high_8
[»] chr2 (1 HSPs)
chr2 (1-296)||(2540092-2540388)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 2540092 - 2540388
Alignment:
Q  1 atatgcgaaccatataacatcaatttcgcaaaaatcaatgtcattgacaaaacacacaggggcttgccgctgtgctgcttagtgtttaaagtaaatattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2540092 atatgcgaaccatataacatcaatttcgcaaaaatcaatgtcattgacaaaacacacaggggcttgccgctgtgctgcttagtgtttaaagtaaatattt 2540191  T
Q  101 atatgtatgtgctctcgggttggatccagggattcgtcattcatgtgtatgaaaaacttatcgtaggagatttattgtcttaggcgaacaatcatacccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2540192 atatgtatgtgctctcgggttggatccagggattcgtcattcatgtgtatgaaaaacttatcgtaggagatttattgtcttaggcgaacaatcatacccc 2540291  T
Q  201 attatggatctaata-aggaaattatgtgaacataaatttatcaacttacttgcaaccagnnnnnnnntcctcgcaagagaaacaaaaccctatgct 296  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||    
T  2540292 attatggatctaatacaggaaattatgtgaacataaatttatcgacttacttgcaaccagaaaaaaaatcctcgcaagagaaacaaaaccctatgct 2540388  T

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