View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12090_low_1 (Length: 755)

Name: NF12090_low_1
Description: NF12090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12090_low_1
NF12090_low_1
[»] chr4 (14 HSPs)
chr4 (135-739)||(23345751-23346369)
chr4 (69-132)||(15051133-15051198)
chr4 (69-132)||(30597703-30597768)
chr4 (69-132)||(36011847-36011912)
chr4 (69-132)||(51921262-51921327)
chr4 (70-132)||(46672443-46672507)
chr4 (100-132)||(35291578-35291610)
chr4 (100-132)||(49426087-49426119)
chr4 (100-132)||(53441324-53441356)
chr4 (70-136)||(43852619-43852686)
chr4 (69-132)||(10472501-10472566)
chr4 (69-132)||(13635722-13635787)
chr4 (77-132)||(38010145-38010202)
chr4 (69-132)||(49492509-49492574)
[»] chr6 (4 HSPs)
chr6 (69-135)||(6900804-6900872)
chr6 (69-132)||(1536893-1536958)
chr6 (100-132)||(7089086-7089118)
chr6 (69-132)||(31216666-31216731)
[»] chr8 (5 HSPs)
chr8 (69-132)||(41099186-41099251)
chr8 (70-132)||(10237358-10237422)
chr8 (70-132)||(43690644-43690708)
chr8 (100-132)||(15227034-15227066)
chr8 (69-132)||(34633318-34633383)
[»] chr7 (6 HSPs)
chr7 (69-132)||(30884219-30884284)
chr7 (69-132)||(31660073-31660138)
chr7 (70-132)||(41911107-41911171)
chr7 (70-132)||(46358524-46358588)
chr7 (69-132)||(16933241-16933306)
chr7 (69-132)||(16938624-16938689)
[»] chr5 (4 HSPs)
chr5 (69-132)||(13552987-13553052)
chr5 (69-132)||(14394472-14394537)
chr5 (69-132)||(14940353-14940418)
chr5 (69-132)||(15416668-15416733)
[»] chr3 (11 HSPs)
chr3 (69-132)||(3475404-3475469)
chr3 (69-132)||(6097681-6097746)
chr3 (69-132)||(19284675-19284740)
chr3 (69-132)||(46237755-46237820)
chr3 (69-132)||(47335036-47335101)
chr3 (100-132)||(54379167-54379199)
chr3 (100-139)||(41192380-41192419)
chr3 (102-132)||(2941958-2941988)
chr3 (69-132)||(9595977-9596042)
chr3 (69-132)||(10986356-10986421)
chr3 (69-132)||(33414010-33414075)
[»] chr2 (6 HSPs)
chr2 (69-132)||(15016563-15016628)
chr2 (69-132)||(39355039-39355104)
chr2 (100-132)||(9143589-9143621)
chr2 (100-132)||(18762871-18762903)
chr2 (100-132)||(34464715-34464747)
chr2 (69-132)||(7487251-7487316)
[»] chr1 (12 HSPs)
chr1 (69-132)||(24635930-24635995)
chr1 (100-132)||(19897790-19897822)
chr1 (100-132)||(43452546-43452578)
chr1 (100-132)||(48762361-48762393)
chr1 (69-132)||(4097905-4097970)
chr1 (69-132)||(11421598-11421663)
chr1 (69-132)||(18618839-18618904)
chr1 (69-132)||(25889025-25889090)
chr1 (69-132)||(49936934-49936999)
chr1 (69-132)||(50351807-50351872)
chr1 (70-132)||(28375468-28375532)
chr1 (70-136)||(44688608-44688676)


Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 135 - 739
Target Start/End: Complemental strand, 23346369 - 23345751
Alignment:
Q  135 cccatgaattcaactagccgaaacatttgaacttttattttatcaagctcgtatacaaattagttatcatcactggatcaattgaaatatgacaggattt 234  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||| ||||  ||||||||||| ||||||||||||||    
T  23346369 cccatgaattcaactagccgaaacatttcaacttttattttatcaagttcatatacaaattagttat-atcataggatcaattgagatatgacaggattt 23346271  T
Q  235 attaatcaaattgtgaaaagtgtattttgtgcatggtgcgagactattttacttatatatagtaaacaaggtcataaaggtaa------------ggggc 322  Q
    ||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||            |||||    
T  23346270 attaatcaaattgtgaaaagcttattttgtgcatggtgcaagactattttacttatatatagtaaacaaggtcataaaggtaacaaatcttttgaggggc 23346171  T
Q  323 aaaaaa-ccttttcacgttgaagacaaaaatgtgatgatggaccnnnnnnnccttatcgtctcc-gtgtgaaaaaagtttttagcccctcgccagatttg 420  Q
    |||||| ||||||||||||||||||||||||||||||| |||||       ||||||||||||| |||||||||||||||||| |||||| |||||||||    
T  23346170 aaaaaaaccttttcacgttgaagacaaaaatgtgatgagggaccaaaaaaaccttatcgtctcccgtgtgaaaaaagtttttaacccctcaccagatttg 23346071  T
Q  421 agactattttacctatatacgaaggactaaaaaccttttcacacaggagacagaaacgattaattttaaaaagagtagactactttcacgagcgtgataa 520  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23346070 agactattttacctatatatgaaggactaaaaaccttttcacacaggagacagaaacgattaattttaaaaagagtagactactttcacgagcgtgataa 23345971  T
Q  521 aataagaaataattagtacaattaaaccaactttttattatatatatnnnnnnntcttagatattgtgagtttgtgacaggacagaacccatataaatac 620  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||| ||||||||||||    
T  23345970 aataagaaataattagtacaattaaaccaactttttattatatatataaaaaaatcttagatattgtgagtttgtgacagaacagaaaccatataaatac 23345871  T
Q  621 tgtccaagtgtctgcacactgcacaggtcccctcaagcatatctaacaacaagaagtaaaaatcctctgatcaagattcag-aagaagaaaaatggtttc 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  23345870 tgtccaagtgtctgcacactgcacaggtcccctcaagcatatctaacaacaagaagtaaaaatcctctgatcaagattcagaaagaaaaaaaatggtttc 23345771  T
Q  720 acaagaaataagcagaaaag 739  Q
    |||||||||||| |||||||    
T  23345770 acaagaaataagtagaaaag 23345751  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 15051133 - 15051198
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  15051133 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 15051198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 30597768 - 30597703
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  30597768 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 30597703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 36011912 - 36011847
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  36011912 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 36011847  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 51921262 - 51921327
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  51921262 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 51921327  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 46672507 - 46672443
Alignment:
Q  70 aaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    ||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  46672507 aaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 46672443  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 35291578 - 35291610
Alignment:
Q  100 tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||||    
T  35291578 tgcataaggaaataacttatgcaccataacttt 35291610  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 49426087 - 49426119
Alignment:
Q  100 tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||||    
T  49426087 tgcataaggaaataacttatgcaccataacttt 49426119  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 53441356 - 53441324
Alignment:
Q  100 tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||||    
T  53441356 tgcataaggaaataacttatgcaccataacttt 53441324  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 43852619 - 43852686
Alignment:
Q  70 aaatctgatggttatgaagtccttatgcat-tgcataaggaaataacttatgcaccataactttgccc 136  Q
    |||||||||| |||||||||  |||||||| |||||||| |||| |||||||||  ||||||||||||    
T  43852619 aaatctgatgattatgaagtatttatgcatgtgcataagaaaatgacttatgcataataactttgccc 43852686  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 10472566 - 10472501
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| |||| |  |||||||   ||||||||||||| |||||||||||||||||||    
T  10472566 gaaatctgatggttgtgaaatgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 10472501  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 13635722 - 13635787
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   ||||||||||||| |||||||||||||||||||    
T  13635722 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 13635787  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 38010202 - 38010145
Alignment:
Q  77 atggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||| ||||||  ||||||||  ||||||||||||| |||||||||||||||||||    
T  38010202 atggttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataacttt 38010145  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 49492509 - 49492574
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   ||||||||||||| |||||||||||||||||||    
T  49492509 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 49492574  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 6900872 - 6900804
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataactttgcc 135  Q
    |||||||||||||| ||| ||  |||||||   ||||||||||||||||||||||||||||||||||||    
T  6900872 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataactttgcc 6900804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 1536893 - 1536958
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  1536893 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 1536958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 7089118 - 7089086
Alignment:
Q  100 tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||||    
T  7089118 tgcataaggaaataacttatgcaccataacttt 7089086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 31216731 - 31216666
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   ||||||||||||| |||||||||||||||||||    
T  31216731 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 31216666  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 41099251 - 41099186
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  41099251 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 41099186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 10237422 - 10237358
Alignment:
Q  70 aaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    ||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  10237422 aaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 10237358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 43690708 - 43690644
Alignment:
Q  70 aaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    ||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  43690708 aaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 43690644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 15227066 - 15227034
Alignment:
Q  100 tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||||    
T  15227066 tgcataaggaaataacttatgcaccataacttt 15227034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 34633318 - 34633383
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   ||||||||||||||||||||| |||||||||||    
T  34633318 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgtaccataacttt 34633383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 30884219 - 30884284
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  30884219 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 30884284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 31660138 - 31660073
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  31660138 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 31660073  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 41911107 - 41911171
Alignment:
Q  70 aaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    ||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  41911107 aaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 41911171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 46358588 - 46358524
Alignment:
Q  70 aaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    ||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  46358588 aaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 46358524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 16933241 - 16933306
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   ||||||||||||| |||||||||||||||||||    
T  16933241 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 16933306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 16938624 - 16938689
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   ||||||||||||| |||||||||||||||||||    
T  16938624 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 16938689  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 13553052 - 13552987
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  13553052 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 13552987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 14394537 - 14394472
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  14394537 gaaatctgatggttgtgatgtatttatgcacggtgcataaggaaataacttatgcaccataacttt 14394472  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 14940353 - 14940418
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  14940353 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 14940418  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 15416733 - 15416668
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  15416733 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 15416668  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 3475404 - 3475469
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  3475404 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 3475469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 6097681 - 6097746
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||| ||||||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  6097681 gaaatctgatagttatgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 6097746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 19284740 - 19284675
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  19284740 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 19284675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 46237755 - 46237820
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  46237755 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 46237820  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 47335101 - 47335036
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  47335101 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 47335036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 54379199 - 54379167
Alignment:
Q  100 tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||||    
T  54379199 tgcataaggaaataacttatgcaccataacttt 54379167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 139
Target Start/End: Original strand, 41192380 - 41192419
Alignment:
Q  100 tgcataaggaaataacttatgcaccataactttgccccat 139  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  41192380 tgcataaggaaatgacttatgcaccataacttttccccat 41192419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 132
Target Start/End: Original strand, 2941958 - 2941988
Alignment:
Q  102 cataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||    
T  2941958 cataaggaaataacttatgcaccataacttt 2941988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 9595977 - 9596042
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||| ||||||||||||||||||    
T  9595977 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatagcttatgcaccataacttt 9596042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 10986421 - 10986356
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||| ||  |||||||   |||||||||||||||||||| || |||||||||    
T  10986421 gaaatctgatggttatgatgtgtttatgcacggtgcataaggaaataacttatacatcataacttt 10986356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 33414010 - 33414075
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   ||||||||||||| |||||||||||||||||||    
T  33414010 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 33414075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 15016563 - 15016628
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  15016563 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 15016628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 39355104 - 39355039
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  39355104 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 39355039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 9143621 - 9143589
Alignment:
Q  100 tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||||    
T  9143621 tgcataaggaaataacttatgcaccataacttt 9143589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 18762903 - 18762871
Alignment:
Q  100 tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||||    
T  18762903 tgcataaggaaataacttatgcaccataacttt 18762871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 34464747 - 34464715
Alignment:
Q  100 tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||||    
T  34464747 tgcataaggaaataacttatgcaccataacttt 34464715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 7487251 - 7487316
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||| ||||||||||||||||||    
T  7487251 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatagcttatgcaccataacttt 7487316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 24635995 - 24635930
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||||||||||||||||||||||    
T  24635995 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataacttatgcaccataacttt 24635930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 19897790 - 19897822
Alignment:
Q  100 tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||||    
T  19897790 tgcataaggaaataacttatgcaccataacttt 19897822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 43452578 - 43452546
Alignment:
Q  100 tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||||    
T  43452578 tgcataaggaaataacttatgcaccataacttt 43452546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 48762361 - 48762393
Alignment:
Q  100 tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||||||||||||||||||||||    
T  48762361 tgcataaggaaataacttatgcaccataacttt 48762393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 4097905 - 4097970
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    ||||| |||||||| ||||||  |||||||   |||||||||||||| ||||||||||||||||||    
T  4097905 gaaatttgatggttgtgaagtgtttatgcacggtgcataaggaaatagcttatgcaccataacttt 4097970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 11421663 - 11421598
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||||||  |||||||   ||||||||||||| | |||||||||||||||||    
T  11421663 gaaatctgatggttgtgaagtgtttatgcacggtgcataaggaaatgatttatgcaccataacttt 11421598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 18618904 - 18618839
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   ||||||||||||||| |||||||||||||||||    
T  18618904 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaataatttatgcaccataacttt 18618839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 25889025 - 25889090
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   |||||||||||||| ||||||||||||||||||    
T  25889025 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatagcttatgcaccataacttt 25889090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 49936934 - 49936999
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   ||||||||||||| |||||||||||||||||||    
T  49936934 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 49936999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 50351872 - 50351807
Alignment:
Q  69 gaaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    |||||||||||||| ||| ||  |||||||   ||||||||||||| |||||||||||||||||||    
T  50351872 gaaatctgatggttgtgatgtgtttatgcacggtgcataaggaaatgacttatgcaccataacttt 50351807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 28375532 - 28375468
Alignment:
Q  70 aaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataacttt 132  Q
    ||||||||||||| ||| ||  |||||||   ||||||| |||||||||||||||||||||||||    
T  28375532 aaatctgatggttgtgatgtgtttatgcacggtgcataaagaaataacttatgcaccataacttt 28375468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 44688608 - 44688676
Alignment:
Q  70 aaatctgatggttatgaagtccttatgcat--tgcataaggaaataacttatgcaccataactttgccc 136  Q
    ||||||||||||| ||||||  |||||||   ||||||||||||| |||||||||  ||||||||||||    
T  44688608 aaatctgatggttgtgaagtgtttatgcagcgtgcataaggaaatgacttatgcatgataactttgccc 44688676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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