View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12090_low_2 (Length: 603)
Name: NF12090_low_2
Description: NF12090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12090_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 11 - 585
Target Start/End: Original strand, 41467922 - 41468497
Alignment:
| Q |
11 |
cctagctaactaacaatgcacgatcaagatgatgataaaagacaaaatgaagctacgtataggcttagtagtaagaactaagaagtagggtcacgaactt |
110 |
Q |
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| T |
41467922 |
cctagctaactaacaatgcacgatcaagatgatgataaaagacaaaatgaagctacgtataggcttagtagtaagaactaagaagtagggtcacgaactt |
41468021 |
T |
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| Q |
111 |
gnnnnnnngaacggttttgaataacaatgtcgtacatatgaaagtgcttaaaactactgaagtttcttgggagtgatagaaggtgtggagatgtgtctga |
210 |
Q |
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| T |
41468022 |
gaaaaaaagaacggttttgaataacaatgtcgtacatatgaaagtgcttaaaactattgaagtttcttgggagtgatagaaggtgtggagatgtgtctga |
41468121 |
T |
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| Q |
211 |
acgatgaaactggatgtggtctggaagatgagagtgagagtaacgagtccaaccaagttcagtgagtcgttgctcaagttgagagaaggaatgaatgact |
310 |
Q |
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| T |
41468122 |
acgatgaaactggatgtggtctggaagatgagagtgagagtaacgagtccaaccaagttcagtgagtcgttgctcaagttgagagaaggaatgaatgact |
41468221 |
T |
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| Q |
311 |
tggtttgttggaagatatacaagaattcttggtcttgcacctggtgctgttgctgttcctgttcctggttctgtcttgtgctcaaaggattctcttgttg |
410 |
Q |
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| T |
41468222 |
tggtttgttggaagatatacaagaactcttggtcttgcacctggtgctgttgctgttcctgttcctggttctgtcttgtgctcgaaggattctcttgttg |
41468321 |
T |
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| Q |
411 |
ggttggttattaacctcaccacacctttcttgtcaaatacccatacacctgacattacttgctttcctttgtttcactg-tttcacttttcactatctcc |
509 |
Q |
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| T |
41468322 |
ggttggttattaacctcaccacacctttcttgtcaaatacccatacacctgacattacttgctttcctttgtttcactgttttcacttttcactatctcc |
41468421 |
T |
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| Q |
510 |
agtgtatctatcacttatatgtatgtgttgagttaagaaaattgaacacttgatgaaagagaatcatagagtttat |
585 |
Q |
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| T |
41468422 |
agtgtatctatcacttatatgtatgtgttgagttaagaaaattgaacccttgatgaaagagaatcatagagtttat |
41468497 |
T |
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