View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12090_low_4 (Length: 444)
Name: NF12090_low_4
Description: NF12090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12090_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 2327466 - 2327896
Alignment:
| Q |
1 |
gtgcttaactaactatataagtgaaaagaataatgtttacgagacttatctcaaaatacaacatattcttctagatctgacagcattttggatgcagtgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2327466 |
gtgcttaactaactatataagtgaaaagaataatgtt-atgagacttatctcaaaatacaacatattcttctagatctgacagcattttggatgcagtgt |
2327564 |
T |
|
| Q |
101 |
ttcttacaggcttcttcacagatacaccgatatagcaccattctcagggttaacccccacataaaccagataacacactttggtattgaattaacctttt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2327565 |
ttcttacaggcttcatcacagatacaccgatatagcaccattctcagggttaacccccacatataccagataacacactttggtattgaattaacctttt |
2327664 |
T |
|
| Q |
201 |
cagtgtgccccccttgaaaaatcaacaattttcgatagctaccaaccttcgtttcccgaaaaaggaaactggtgtcaactattgcttaatagtgtgtgta |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2327665 |
cagtgtgccccccttgaaaaataaacaattttcgatagctaccaaccttcgtttcccgaaaaaggaaactggtgtcaactattgcttaatagtgtgtgta |
2327764 |
T |
|
| Q |
301 |
cagttataataggtttggcttnnnnnnntcgtttactgcataaaaaacattgggtaaagaagtaggatgattctctct-nnnnnnnggtaaatttgtgtg |
399 |
Q |
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||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2327765 |
cagttataataggtttggcttaaaaaaatcgatcactgcataaaaaacattgggtaaagaagtaggatgattctctctaaaaaaaatgtaaatttgtgtg |
2327864 |
T |
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| Q |
400 |
gtgatttttagggtacacaaatggttacaagt |
431 |
Q |
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|| ||||||||||||||||||||||| |||| |
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| T |
2327865 |
atggtttttagggtacacaaatggttataagt |
2327896 |
T |
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