View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12090_low_5 (Length: 414)
Name: NF12090_low_5
Description: NF12090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12090_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 40076952 - 40076565
Alignment:
| Q |
16 |
atttcaactactctagtttttatctactacacccgcagttgaagcccaacaaactcgagcgacctacccacttatcagtaaactatgaatcataccctac |
115 |
Q |
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| T |
40076952 |
atttcaactactctagtttttatctaccacacccgcagttgaagcccaacaaactcgagcgacctacccacttatcagtaaactatgaatcataccctac |
40076853 |
T |
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| Q |
116 |
agaaatcataacaatgtgtaaccaatagccaaagataaatcaggttacgcaactcaatgcataaaattgattcaagttaagttctttcctataccatctt |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40076852 |
agaaatcataacaatgtgtaaccactagccaaagataaatcaggttacgcaactcaatgcatgaaattgattcaagttaagttctttcctataccatctg |
40076753 |
T |
|
| Q |
216 |
catattagtgtatcaatatggaggagctttgtagaacaagtgtggttttttcgccttataataaggatggttttctttgatgagacctcaaatttacaga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40076752 |
catattagtgtatcaatatggaggagctttgtagaacaagtgtggttttttcgccttataataaggatggttttctttgttgagacctcaaatttacaga |
40076653 |
T |
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| Q |
316 |
aaaacacaaaaacatgttcgtggggacaaggaatttgacaaacaaacaacatattctgaaatcaagaacatttcccaagccacttctt |
403 |
Q |
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| T |
40076652 |
agaacacaaaaacatgttcgtggggacaaggaatttgacaaacaaacaacatattctgaaatcaagaacatttcccaagccacttctt |
40076565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 34372551 - 34372591
Alignment:
| Q |
72 |
gagcgacctacccacttatcagtaaactatgaatcataccc |
112 |
Q |
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| T |
34372551 |
gagcgacctgccaacttatcagtaaactatgagtcataccc |
34372591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 27318448 - 27318399
Alignment:
| Q |
69 |
ctcgagcgacctacccacttatcagtaaactatgaatcataccctacaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
27318448 |
ctcgagcgacctacccacttatcagtaaactatgtgtcatacccaacaga |
27318399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 5455793 - 5455752
Alignment:
| Q |
69 |
ctcgagcgacctacccacttatcagtaaactatgaatcatac |
110 |
Q |
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| T |
5455793 |
ctcgagcgacctagccactaatcagtaaactatgagtcatac |
5455752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 38270137 - 38270188
Alignment:
| Q |
70 |
tcgagcgacctacccacttatcagtaaactatgaatcataccctacagaaat |
121 |
Q |
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||||||||||| |||| ||||||||||||||||| |||||| |||||||||| |
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| T |
38270137 |
tcgagcgacctgcccaattatcagtaaactatgagtcatactctacagaaat |
38270188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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