View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12090_low_6 (Length: 396)
Name: NF12090_low_6
Description: NF12090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12090_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 29006226 - 29006596
Alignment:
| Q |
18 |
tatggtgataataatgtctaaatattcattaagaagaatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgtc |
117 |
Q |
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| T |
29006226 |
tatggtgataataatgtctaaatattcattaagaagaatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgtc |
29006325 |
T |
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| Q |
118 |
tcttttcttattaaacactaatggaaacaactcacaaaatgcttggacacgttgttatggcacaagtatgttgtgtggacctgaagctatagaataggaa |
217 |
Q |
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| T |
29006326 |
tcttttcttattaaacactaatggaaacaactcacaaaatgcttggacacgttgttatggcacaagtatgttgtgtggacctgaagctatagaataggaa |
29006425 |
T |
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| Q |
218 |
caagttgaagcaaactagcaatggcatgaatcaagatttagagtcctgacgaaggggatgggagttgaacctactccctttaaggaccatgaatcaacta |
317 |
Q |
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| T |
29006426 |
caagttgaagcaaactagcaatggcatgaatcaagatttagagtcctgacgaaggggatgggagttgaatctactccctttaaggaccatgaatcaacta |
29006525 |
T |
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| Q |
318 |
tttatcaattaaacctacctatatgttacatgtatacccattaaaaatgatttggagaagttcatctcatt |
388 |
Q |
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| T |
29006526 |
tttatcaattaaaccaacctatatgttacatgtttacccattaaaaatgatttggagaatttcatttcatt |
29006596 |
T |
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