View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12091_high_10 (Length: 255)
Name: NF12091_high_10
Description: NF12091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12091_high_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 46440807 - 46441046
Alignment:
| Q |
16 |
acatcataatcactatgcataacaatttttaggatcatcatcctcaccattatctaacaatgtcttccatttttccatccattcttctgaatccactccc |
115 |
Q |
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| T |
46440807 |
acatcataatcactatgcataacaatttttaggatcatcatcctcaccattatctaacaatgtcttccatttttccatccattcttctgaatccactccc |
46440906 |
T |
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| Q |
116 |
tagtttcaacatgactgtgaccaaagaacaattcaacttattttacaatgttgacaggcaactcttcactcgtttggtggtggggcttggccgtgaggct |
215 |
Q |
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| T |
46440907 |
tagtttcaacatgactgtgaccaaagaacaattcaacttattttacaatgttgacaggcaactcttcactcgtttggtggtggggcttggccgtgaggct |
46441006 |
T |
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| Q |
216 |
tttcaatcgataaatgtaatggctttcttgatgtggattg |
255 |
Q |
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| T |
46441007 |
tttcaatcgataaatgtaatggctttcttgatgtggattg |
46441046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 251
Target Start/End: Complemental strand, 18331789 - 18331605
Alignment:
| Q |
67 |
atctaacaatgtcttccatttttccatccattcttctgaatccactccctagtttcaacatgactgtgaccaaagaacaattcaacttattttacaatgt |
166 |
Q |
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| T |
18331789 |
atctaaaaatgtcttctattctaccatccattccctcaaatccactcccaaatttcattgtgattgtgaccaaagaagaatttaacttgttttacagtgt |
18331690 |
T |
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| Q |
167 |
tgacaggcaactcttcactcgtttggtggtggggcttggccgtgaggcttttcaatcgataaatgtaatggctttcttgatgtgg |
251 |
Q |
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| T |
18331689 |
tgatcgacaactcttcactcgtttgctggtcgcgcttgatcgtgagatctctcagtcaataaatgtaatggccttcctcatgtgg |
18331605 |
T |
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