View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12091_high_3 (Length: 647)
Name: NF12091_high_3
Description: NF12091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12091_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 19 - 643
Target Start/End: Original strand, 24561104 - 24561725
Alignment:
| Q |
19 |
ttgcatgtcataatcaaccttaaccggcacaaattcctcaacagcattattactaattaaccctccactattactataaatcccactagaaccaccacca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24561104 |
ttgcatgtcataatcaaccttaaccggcacaaattcctcaacagcattattactaattaaccctccactattactataaatcccactagaaccaccacca |
24561203 |
T |
|
| Q |
119 |
ttatttcccatcactgaagatgaagaagaagatcctatattattcatctgaaacaaaccaggatgattctgataataaccattgtagaatgaacctatgt |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24561204 |
ttatttcccatcaccgaagatgaagaagaagatcctatattattcatctgaaacaaaccaggatgattctgataataaccattgtagaatgaacctatgt |
24561303 |
T |
|
| Q |
219 |
tactattctgagatggttgttggttttgttgttgacacaactcaagctgtgtttggaaataaccgccaccttggtgttgagtgaattgttgagaattcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
24561304 |
tactattctgagatggttgttggttttgttgttgacacaactcaagctgtgtttggaaataaccaccaccttggtgttgagagaattgttgagaattcaa |
24561403 |
T |
|
| Q |
319 |
gctttcatggttgttttgtaatgttagcaatggttgaggttgttgttcaaattggtgttgatattgcatgagaggatagggttggagtctagtgttactg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24561404 |
gctttcatggttgttttgtaatgttagcaatggttgag---gttgttcaaattggtgatgatattgcatgagagggtagggttggagtctagtgttacta |
24561500 |
T |
|
| Q |
419 |
gagcttgatgttccatattggaaagatgaagagttgagtgcaagcatttcttcgcgttttctcgaagtttctagagcttgtgcttcttttagtctttttg |
518 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24561501 |
gagcttgatgttccatattggaaagatgatgagttaagtgcaagcatttcttcgcgttttctcgaagtttctagagcttgtgcttcttttagtctttttg |
24561600 |
T |
|
| Q |
519 |
cagctcctcctccgattggaagtgtattgctttcgagaattgctttcacgtcataacgagtcatgtcaaagtttgttacagcgttgagtcctctgaattt |
618 |
Q |
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||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24561601 |
cagctcctcctccaattggcagtgtgttgctttcgagaatggctttcacgtcgtaacgagtcatgtcaaagtttgttacagcgttgagtcctctgaattt |
24561700 |
T |
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| Q |
619 |
tattgctgctatgtcctatgcttct |
643 |
Q |
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| T |
24561701 |
tattgctgctatgtcgtatgcttct |
24561725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 475 - 643
Target Start/End: Original strand, 41963684 - 41963852
Alignment:
| Q |
475 |
ttttctcgaagtttctagagcttgtgcttcttttagtctttttgcagctcctcctccgattggaagtgtattgctttcgagaattgctttcacgtcataa |
574 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||| ||||| || || | ||||| ||||| ||||||||||| ||| |
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| T |
41963684 |
ttttctagaagattctagagcttgtgcttcttttaatctttttgcagcacctcctcctattgggagagtgatactttcaagaatcgctttcacgtcgtaa |
41963783 |
T |
|
| Q |
575 |
cgagtcatgtcaaagtttgttacagcgttgagtcctctgaattttattgctgctatgtcctatgcttct |
643 |
Q |
| |
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||| ||||||||||||||||||| ||||| | |||||||||||| ||||| |||||||| ||||||||| |
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| T |
41963784 |
cgattcatgtcaaagtttgttactgcgtttaatcctctgaatttgattgcagctatgtcatatgcttct |
41963852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 627
Target Start/End: Original strand, 30618307 - 30618355
Alignment:
| Q |
579 |
tcatgtcaaagtttgttacagcgttgagtcctctgaattttattgctgc |
627 |
Q |
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|||||||||||||||| || || | ||||||||||||||||||||||| |
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| T |
30618307 |
tcatgtcaaagtttgtaactgcactcagtcctctgaattttattgctgc |
30618355 |
T |
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