View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12091_high_9 (Length: 279)
Name: NF12091_high_9
Description: NF12091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12091_high_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 75 - 279
Target Start/End: Original strand, 8035724 - 8035928
Alignment:
| Q |
75 |
ttacattggaccgcacatcagcttttgacaaaacaaggagtgcaatcaaacttgtcaaaccttgaagagaatttaacaatggaatcaaaaaccttagaat |
174 |
Q |
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| T |
8035724 |
ttacatttgaccgcacatcagcttttgacaaaacaagaagtgcaatcaaacatgtcaaagcttgaacagaatttaacaatggaatcaaaaaccttagaat |
8035823 |
T |
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| Q |
175 |
catcactttcagttccaagtgttcaagagctatcactccaaagtccccaaaaagtaccagaaaggtacataagagatgatggtgatgatgttttcagcac |
274 |
Q |
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| T |
8035824 |
catcactttcagttccaagtgttcaagagctatcactcaaaagttcacaaaaagtaccacagaggtacataagagatgatggtgatgatgttttcagcac |
8035923 |
T |
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| Q |
275 |
ctttc |
279 |
Q |
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| T |
8035924 |
ctttc |
8035928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 8035570 - 8035609
Alignment:
| Q |
15 |
tcaaaatatttatagactaaaacaatattcgactcttcaa |
54 |
Q |
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| T |
8035570 |
tcaaaatatttatagactaaaacaatattcgacacttcaa |
8035609 |
T |
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