View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12091_low_12 (Length: 248)
Name: NF12091_low_12
Description: NF12091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12091_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 32821555 - 32821723
Alignment:
| Q |
19 |
caaaattacaggaaaacagagtgcaaaattagatcaaaattataaaataagggagaccaacaccatctctataatcctagaatacacgccatctttgatt |
118 |
Q |
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| T |
32821555 |
caaaattacagtaaaacaaagtgcaaaattagatcaaaattataaaataagggagaccaacaccatctctataatcctagaatacacgccatctttgatt |
32821654 |
T |
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| Q |
119 |
tatcaaagatgttagagatacataagttttagaataaagtctcttcgtgacaacgatctcaaacataga |
187 |
Q |
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| T |
32821655 |
tatcaaagatgttagagatacataagtttcagaataaagtctcttagtgacaacgatctcaaacataga |
32821723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 32821961 - 32822108
Alignment:
| Q |
88 |
tataatcctagaatacacgccatctttgatttatcaaagatgttagagatacataagttttagaataaagtctcttcgtgacaacgatctcaaacataga |
187 |
Q |
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| T |
32821961 |
tataatcctagaatacacgccatctttgatttatcaaagatgttagagatacataagttttagaataaagtctcttagtgacaacgatctcaaacataga |
32822060 |
T |
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| Q |
188 |
gag--agatatacatataacaattatccattgacttgtggttcttcct |
233 |
Q |
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| T |
32822061 |
gagaaatatatacatataacaattatccattgacctgtggttcttcct |
32822108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 32821751 - 32821785
Alignment:
| Q |
199 |
atataacaattatccattgacttgtggttcttcct |
233 |
Q |
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| T |
32821751 |
atataacaattatccattggcttgtggttcttcct |
32821785 |
T |
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