View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12091_low_4 (Length: 420)
Name: NF12091_low_4
Description: NF12091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12091_low_4 |
 | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 25762475 - 25762791
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||||||||| || |
|
|
| T |
25762475 |
aatgacagttttcttacaatattgcaggctcggttcaaggacgccgattacaacatgaattttcatttgaaggaacaattcaggcaatttgttttaccag |
25762574 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25762575 |
agaccacctctatgcgtccaccgccaaataaggtcaccac-caaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
25762673 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25762674 |
tatgggagattgttgactccaaggagcaagagacatagggttcacagacaagatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
25762773 |
T |
|
| Q |
301 |
tactcctcctaagccaac |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25762774 |
tactcctcctaagccaac |
25762791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 23351357 - 23351041
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
23351357 |
aatgacagttttcttacaatattgcaggctcggttcaaggacgccgattacaacatgaagttgcatttgaaggaacaattccaacaatttgttttaccag |
23351258 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23351257 |
agatcacctctatgcgtccaccgccaaataaggtcaccac-caaaggagctcccaagaaagataagcaaagcattcgatcgacaaggcggtccccttcac |
23351159 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23351158 |
tatgggagattgttgactcccaagagcaagagacacagggttcacagacaagatcaacagggaccagtaggaagagtgcacggaaaagcaacatgtcacc |
23351059 |
T |
|
| Q |
301 |
tactcctcctaagccaac |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23351058 |
tactcctcctaagccaac |
23351041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 20234525 - 20234213
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| ||||||||| || |||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
20234525 |
aatgacagttttcttacaatattgcaggctcggttcaaggacattgattacaacgtggagttgcatttgaaggaacaattccaacaatttgttttaccaa |
20234426 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
|||||| || |||||||||| |||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
20234425 |
agaccaactatatgcgtccaccgccaaataaggtcaccac-cataggagctcctaagaaagataagcaaaacattcgatcgacaaggcggtcccctttgc |
20234327 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20234326 |
tatgggagattgttgactcacaggagcaagagacacagggttcacatacaagatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
20234227 |
T |
|
| Q |
301 |
tactcctcctaagc |
314 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
20234226 |
tgctcctcctaagc |
20234213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 16492078 - 16491783
Alignment:
| Q |
21 |
attgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactagagaccacctctatgcgtcca |
120 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||| | ||||||||||| || |||||||||||| |||||||||||||||||||||| |
|
|
| T |
16492078 |
attgcaggctcgattcaaggacgccgattacaacatgaagttgcatataaaggaacaatttcgaaaatttgttttaccagagaccacctctatgcgtcca |
16491979 |
T |
|
| Q |
121 |
tcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgctatgggagattgttgactcc |
220 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16491978 |
ccgccaaataagttcaccac-caaaggagctccaaagaaagataagcaaagcattcgatcgacaaggcggtccccttccctatgggagattgttgactcc |
16491880 |
T |
|
| Q |
221 |
caggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaa |
317 |
Q |
| |
|
||||||||||||||| |||| ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
16491879 |
caggagcaagagacacagggttcactgacaaaatcaacagggacgagtagaaagagtgcacggaaaagcaacatgtctcatactcctcctaagccaa |
16491783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 142 - 318
Target Start/End: Complemental strand, 34828394 - 34828221
Alignment:
| Q |
142 |
caaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgctatgggagattgttgactcccaggagcaagagacatagggc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
34828394 |
caaaggagctcctaagaaagataagcaaagc---cgatcgacaaggcggtccccttcgctatgggagattgttgactcccatgagcaagagacacagggt |
34828298 |
T |
|
| Q |
242 |
tcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaac |
318 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34828297 |
tcatagacaagatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctacttttcctaagccaac |
34828221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 34830648 - 34830507
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggat---gccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttac |
97 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
34830648 |
aatgacagttttcttacgatattgcaggctcagttcaaggacaccgccgattacaacatgaagttgcatttgaatgaacaattccggaaatttgttttac |
34830549 |
T |
|
| Q |
98 |
tagagaccacctctatgcgtccatcgccaaataaggtcacca |
139 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34830548 |
cagagaccacctctatgcgtccaccgccaaataaggtcacca |
34830507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 194 - 386
Target Start/End: Complemental strand, 31058796 - 31058603
Alignment:
| Q |
194 |
ccttcgctatgggagattgttgactcccaggagcaagagacatagggctcatagacaatat-caacagggacgagtaggaagagtgcacggaaaagcaac |
292 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||| | ||| | | ||| | | || || |||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
31058796 |
ccttcgctctgggagattgttgactcccaggatcaacaaacacatgcttcacataaaaaattcaacagggacaagtagagaaagtgcacggaaaagcaac |
31058697 |
T |
|
| Q |
293 |
atgtcacctactcctcctaagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaagg |
386 |
Q |
| |
|
||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
31058696 |
atgtctcctaatcctcctaagccaattctggttaaagtcaacataccacacaaagaccaaatcccatattggatgcatgaatttattgaaaagg |
31058603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 311 - 412
Target Start/End: Complemental strand, 20234192 - 20234091
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtcc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| || |
|
|
| T |
20234192 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatatataaatttattgaaagggttacagatgtacccgatgatggcc |
20234093 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
20234092 |
at |
20234091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 25762808 - 25762908
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtcc |
410 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || |
|
|
| T |
25762808 |
aagccaacaccggt-aaagtcaacatacaacacaaagaccaaatcccaatttggatgcataactttattgaaaaggttacagatgtacccggtgatggcc |
25762906 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
25762907 |
at |
25762908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 311 - 412
Target Start/End: Complemental strand, 34828204 - 34828103
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtcc |
410 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| || |
|
|
| T |
34828204 |
aagccaacaccgattaaattcaacataccacacaaagaccaaatcccaattttgatgcataaatttattgaaaaggttacagatgtacctggtgatggcc |
34828105 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
34828104 |
at |
34828103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 311 - 412
Target Start/End: Complemental strand, 23351024 - 23350923
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtcc |
410 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| || |
|
|
| T |
23351024 |
aagccaacatcggttaaagtcaacatatcacataaagaccaaatctcaatttggatgcataaatttattgaaaaggttacagatgtacctggtgatggcc |
23350925 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
23350924 |
at |
23350923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 106 - 386
Target Start/End: Complemental strand, 31043657 - 31043377
Alignment:
| Q |
106 |
acctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgctatgg |
205 |
Q |
| |
|
||||||||||||||| ||||||| || |||||| ||||||||||| |||||| |||| || | |||| || |||| | || |||| ||| | | |
|
|
| T |
31043657 |
acctctatgcgtccaccgccaaaaaaagtcaccccctaaaggagctccaaagaaaaataaacatatcatttagtcaacaaaatgatcgcctttgctctag |
31043558 |
T |
|
| Q |
206 |
gagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactc |
305 |
Q |
| |
|
|||||||||||||||||||| ||| | ||| | ||| | |||| ||||||||||| ||||| | ||||||||||||||||||||||| || || |
|
|
| T |
31043557 |
gagattgttgactcccaggatcaacaaacacgtgcttcacatacaaattcaacagggacaagtagagaaagtgcacggaaaagcaacatgtcttataatc |
31043458 |
T |
|
| Q |
306 |
ctcctaagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaagg |
386 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
31043457 |
ctcctaagccaattctggttaaagtccacataccacacaaagaacaaatcccacattggatgcatgaatttattgaaaagg |
31043377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 315 - 412
Target Start/End: Complemental strand, 16491761 - 16491664
Alignment:
| Q |
315 |
caacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtccat |
412 |
Q |
| |
|
||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
16491761 |
caacacccgttaaagtctatataccacacaaagaccaaatcccaatttggatgcatgactttattgaaaaggttagggatgtacccggtgatggccat |
16491664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 50517124 - 50517440
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |
|
|
| T |
50517124 |
aatgacagttttcttacaatattgcaggctcggttcaaggacgccgattacaacatgaagttgcatttgaaggaacaattccgacaattttttttaccaa |
50517223 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50517224 |
agaccacctctatgcgtccaccaccaaataaggtcaccac-caaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
50517322 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50517323 |
tatgggagattgttgactcccaggagcaagagccacagggttcacagacaagatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
50517422 |
T |
|
| Q |
301 |
tactcctcctaagccaac |
318 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
50517423 |
tactcgtcctaagccaac |
50517440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 33804072 - 33804388
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
33804072 |
aatgatagttttcttacaatattgcaggctcggttgaaggacgccgattacaacatgaagttgcatttgaaggaacaattccgacaatttgttttaccag |
33804171 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33804172 |
agaccacctctatgcgtccaccgccaaataaggtcaccac-caaaggagctcctaagaaagataagcaaaacattcgatcgacaaggcggtccccttcgc |
33804270 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || ||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33804271 |
tatgggagattgttgactcccaggagcaagagacacaaggttcacaaacaagatcaacagggacgagtaggaagagtgcacgaaaaagcaacatgtcacc |
33804370 |
T |
|
| Q |
301 |
tactcctcctaagccaac |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33804371 |
tactcctcctaagccaac |
33804388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 45908749 - 45908435
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||| |||||| || |
|
|
| T |
45908749 |
aatgacagttttcttacaatattgcaggctcggttcaaggacgc-gattacaacatgaagttgcatttgaagaaacaattccgacaatttattttaccag |
45908651 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
45908650 |
agaccacctatatgcgtccaccgccaaataaggtcaccac-caaaggagctcataagaaagataagcaaaac-ttcgatcgacaaggcggtccccttcgc |
45908553 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45908552 |
tatgggagattgttgactcccaggagcaagagacacagggttcatagacaagatcaacagggacgagtaggaagagtgcacgaaaaagcaacatgtcacc |
45908453 |
T |
|
| Q |
301 |
tactcctcctaagccaac |
318 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
45908452 |
tactcttcctaagccaac |
45908435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 44710981 - 44710684
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44710981 |
aatgacagttttcttacaatattgcaggctcggttcaaggacgccgattacaacatgaagttgcatttgaaggaacgattccggcaatttgttttactag |
44710882 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
44710881 |
agaccacctctatgcgtccatcgccaaataaggtcacc-accaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggtggtcccctttgc |
44710783 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
|| |||||||| |||| | || ||| |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
44710782 |
cat-------------------ggagcaagggacacaaggttcacagacaagatcaacagggacgaataggaagagtgcatggaaaagcaacatgtcacc |
44710702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 12865672 - 12865379
Alignment:
| Q |
21 |
attgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactagagaccacctctatgcgtcca |
120 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||||||||| ||||| |||| ||||||||||| || |||||| || |||| ||||||||||| ||| |
|
|
| T |
12865672 |
attgtaggctcggttcaaggacgccgattacaacatgaaggtgcatatgaaagaacaattccgacagtttgtt--accggagaacacctctatgcatccg |
12865575 |
T |
|
| Q |
121 |
tcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgctatgggagattgttgactcc |
220 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12865574 |
ccgccaaataaggtcaccac-caaaggaactccaaagaaagataagcaaaccattcgatcgataaggtggtccccttcgctatgggagattgttgactcc |
12865476 |
T |
|
| Q |
221 |
caggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaa |
317 |
Q |
| |
|
|| || ||| | ||| |||| | | | |||| |||||||||||| ||||| || |||||| | ||||| |||||||| |||||||||| || ||||| |
|
|
| T |
12865475 |
caagaacaaaaaacacagggttgacaaacaaaatcaacagggacaagtagaaaaagtgcatgaaaaagaaacatgtctcctactcctcttatgccaa |
12865379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 311 - 412
Target Start/End: Complemental strand, 45908418 - 45908317
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtcc |
410 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
45908418 |
aagccaacaccggttaaagtcaatataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacagatgtacccggtgatggcc |
45908319 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
45908318 |
at |
45908317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 33804404 - 33804505
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtcc |
410 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
33804404 |
aagccaacaccggttaaagttaacataccacacaaaaaccaaatcccaatttggatgcataaatttattgaaaaggttacaaatgtacccggtgatggcc |
33804503 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
33804504 |
at |
33804505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 311 - 412
Target Start/End: Complemental strand, 44710667 - 44710566
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtcc |
410 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
44710667 |
aagccaacaccggttaaagttaatataccacacaaagaccaaatcctaatttggatgcataaatttattgaaaaggttacagatgtacccggtgatggcc |
44710568 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
44710567 |
at |
44710566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 50517457 - 50517559
Alignment:
| Q |
311 |
aagccaacaccgg-ttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtc |
409 |
Q |
| |
|
||||||||||| | ||||||| || |||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||| | |
|
|
| T |
50517457 |
aagccaacacccgattaaagtaaatatacgacacaaagaccaaatcccaatttgaatgcataaatttattgaaaagggtacagatgtacccggtgatggc |
50517556 |
T |
|
| Q |
410 |
cat |
412 |
Q |
| |
|
||| |
|
|
| T |
50517557 |
cat |
50517559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 311 - 388
Target Start/End: Complemental strand, 12865361 - 12865284
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggtt |
388 |
Q |
| |
|
|||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
12865361 |
aagccagcactggttaaagtccacataccacacaaagaccaaatcccaatttggatgcatgaatttattagaaaggtt |
12865284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 19219368 - 19219684
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19219368 |
aatgacagttttcttacaatattgcaggctcggttcaaggacgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttaccag |
19219467 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
19219468 |
agaccacctctatgcgtccaccgccaaataaggtcaccac-caaaggagctcctaagaaagataagcaaagcattcgatcgacaaggaggtccctttcgc |
19219566 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| | || ||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19219567 |
tatggaagattgttgactcccaagagcaagagacacaaggttcacaaacaagatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
19219666 |
T |
|
| Q |
301 |
tactcctcctaagccaac |
318 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
19219667 |
tacttctcctaagccaac |
19219684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 41255342 - 41255026
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
||||||||||| |||| ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
41255342 |
aatgacagtttccttacaatattgcaagctcggttcaaggacgccgattacaacatgaagttgcatttgaaggaacaattccgacaatttgttttaccag |
41255243 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
41255242 |
agaccacctttatgcgtccaccgccaaataaggtcaccat-caaaggagctcctaagaaagataagtaaagcattcgatcgacaaggcagtccccttcgc |
41255144 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41255143 |
tttgggagattgttgactcccatgagcaagagacatagggttcacaaacaagatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcaac |
41255044 |
T |
|
| Q |
301 |
tactcctcctaagccaac |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
41255043 |
tactcctcctaagccaac |
41255026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 15892762 - 15893056
Alignment:
| Q |
21 |
attgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactagagaccacctctatgcgtcca |
120 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| || ||| |||| ||||||||||| ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
15892762 |
attgcaggctcgattcaaggacgccgattacaacatgaaatttcatatgaaagaacaattccgacaatttgttttaccagagaccacctctatgtgtcca |
15892861 |
T |
|
| Q |
121 |
tcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgctatgggagattgttgactcc |
220 |
Q |
| |
|
| |||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |||| | |||||||||||||| |||||| |
|
|
| T |
15892862 |
ccaccaaataaggtcaccac-caaaggagctccta-gaatgataagcaaagcattcgatcgacaaggcgggaccctcccctatgggagattgtcgactcc |
15892959 |
T |
|
| Q |
221 |
caggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaa |
317 |
Q |
| |
|
||||||||||||||| |||| ||| || ||| ||||||| |||||| ||| |||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
15892960 |
caggagcaagagacacagggttcacagtcaaaatcaacatggacgattagaaagagtgcacggaaaagcaacatgtctcctacttctcctaagccaa |
15893056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 19219701 - 19219802
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtcc |
410 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||||| || |
|
|
| T |
19219701 |
aagccaacaccgtttaaagtcaacataccacacaaagaccaaagttcaatttggatgcataaatttattgaaaaggttatagatgtactcggtgatggcc |
19219800 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
19219801 |
at |
19219802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 15893074 - 15893170
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatg |
407 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
15893074 |
aagcaaacacctgttaaagtccacataccacacaaagaccaaatcccaatttgaatgcatgactttattcaaaaggttacagatgtacccggtgatg |
15893170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 41255009 - 41254943
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaattta |
377 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41255009 |
aagccaacaccggttaaagtcaatataccacacaaagaccaaatcccaatttggatgcataaattta |
41254943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 44711994 - 44712060
Alignment:
| Q |
321 |
cggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggt |
387 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||| | |||||||||||||| |
|
|
| T |
44711994 |
cggttaaagtcgacataccacacaaagaccaaattccaatttggatgcatgactttattgaaaaggt |
44712060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 19337456 - 19337373
Alignment:
| Q |
304 |
tcctcctaagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggt |
387 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||||||||||||| ||||| || |||||||||| |||||| ||||||||| |
|
|
| T |
19337456 |
tcctcctaagccaattccggttgaagtccacataccacacaaagactaaatctcacattggatgcatgaatttaatgaaaaggt |
19337373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 41254785 - 41254743
Alignment:
| Q |
370 |
taaatttattgaaaaggttacatatgtacccggtgatgtccat |
412 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
41254785 |
taaatttattgaaaaggttacagatgtacccggtgatggccat |
41254743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 12630381 - 12630416
Alignment:
| Q |
183 |
caaggcggtccccttcgctatgggagattgttgact |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12630381 |
caaggcggtccccttcgctatgggagattattgact |
12630416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 25009907 - 25009839
Alignment:
| Q |
46 |
gattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactagagaccacctctatg |
114 |
Q |
| |
|
||||||||||||||| ||||| |||| |||||||| | | |||||||||| |||||| ||||||||| |
|
|
| T |
25009907 |
gattacaacatgaagatgcatatgaaagaacaatttcaatagtttgttttaccagagacaacctctatg |
25009839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 23255494 - 23255810
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||| || |
|
|
| T |
23255494 |
aatgacagttttcttacaatattgcaggctcagttcaaggacgccgattacaacatgaagttgaatttgaaggaacaatttcgacaatttgttttaccag |
23255593 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
23255594 |
agaccacatctatgcgtccaccgccaaataaggtcac-aaccaaaggagctcctaagaaagataagcaaagaattcgatcgacaaggcagtccctttcgc |
23255692 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23255693 |
tatgggagattgttgactcccaagagcaagagacacagggttcacagacaagatcaacagggacgagtaggaagagtgcacgaaaaagcaacatgtcacc |
23255792 |
T |
|
| Q |
301 |
tactcctcctaagccaac |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23255793 |
tactcctcctaagccaac |
23255810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 756721 - 757017
Alignment:
| Q |
21 |
attgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactagagaccacctctatgcgtcca |
120 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
756721 |
attgcaggctcggttcaaggacgccgattacaacatgaagttgcatatgaaggaacaattccgacaatttgttttaccagagatcacctctatgcgtcca |
756820 |
T |
|
| Q |
121 |
tcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgctatgggagattgttgactcc |
220 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
756821 |
ccaccaaataaggtcaccat-caaaggagctcctaagaaagataagcaaatcattcgatcgacaaggcggtcttcttcgctatgagagattgttgactcc |
756919 |
T |
|
| Q |
221 |
caggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaac |
318 |
Q |
| |
|
||||||||||||||| | || ||| | ||||||| |||| |||||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
756920 |
caggagcaagagacacatggttcacatacaatattaacatggacgagtagaaagagtgcacagaaaaacaacatgtctcctactcctcctaagccaac |
757017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 23255827 - 23255928
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtcc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
23255827 |
aagccaacaccggttaaagtcaacataccgcacaaagaccaaatcccgatttggatgcctaaatttattgaaaaggttacagatgtacccggtgatggcc |
23255926 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
23255927 |
at |
23255928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 313 - 412
Target Start/End: Original strand, 757036 - 757135
Alignment:
| Q |
313 |
gccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtccat |
412 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| || ||||| |||||| |||| |
|
|
| T |
757036 |
gccaacacccgttaaagtcgacataccacacaaagaccaaatcccaatttggatgcatgactttattgaaaaggttacagatctacccagtgatggccat |
757135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 384
Target Start/End: Complemental strand, 26674886 - 26674697
Alignment:
| Q |
195 |
cttcgctatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacat |
294 |
Q |
| |
|
||||||| | |||||||||||||||| |||| ||| ||||| | | ||| | |||| |||| |||||| ||||| || |||| ||||||||||||||| |
|
|
| T |
26674886 |
cttcgctctaggagattgttgactcctaggatcaacagacacatgcttcacaaacaaattcaatagggacaagtagaaaaagtgtacggaaaagcaacat |
26674787 |
T |
|
| Q |
295 |
gtcacctactcctcctaagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaa |
384 |
Q |
| |
|
||| |||| |||||||||||||| ||||| |||| |||||||||||||||||||||||| | |||||||||| ||| ||||||||| |
|
|
| T |
26674786 |
gtctcctaatcctcctaagccaattttggttatagtccacataccacacaaagaccaaatcctacattggatgcatgaatctattgaaaa |
26674697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 16667232 - 16667313
Alignment:
| Q |
307 |
tcctaagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggtt |
388 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
16667232 |
tcctaagccaattccggttaaagtccatataccacacaaagaccaaatcccacattggatgcatcaatttattgaaaaggtt |
16667313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 317
Target Start/End: Original strand, 16667047 - 16667221
Alignment:
| Q |
143 |
aaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgctatgggagattgttgactcccaggagcaagagacatagggct |
242 |
Q |
| |
|
||||||||||| |||||| |||| || |||||| ||||||| | | || |||||||| | |||||||||| | || ||||| ||| ||||| | | | |
|
|
| T |
16667047 |
aaaggagctccaaagaaaaataaacatttcattcggtcgacaaagggatcgccttcgctctaggagattgtttattcacaggaacaacagacacatgctt |
16667146 |
T |
|
| Q |
243 |
catagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaa |
317 |
Q |
| |
|
|| | |||| ||| || | || ||||| |||||||||||||||||||||||||| |||| || ||||||||||| |
|
|
| T |
16667147 |
cacaaacaaattcagcatgaacaagtagaaagagtgcacggaaaagcaacatgtctcctaatcttcctaagccaa |
16667221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 17310385 - 17310076
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
||||| |||||||||| ||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17310385 |
aatgaaagttttcttacaatatggcaggctcggttcaaggacgccgattacaacatgaagttgcatttgaaggaacaattccgacaatttgttttactag |
17310286 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17310285 |
agaccacctctatgcgtccactgccaaataagggcaccacg-aaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtcccctttgc |
17310187 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||| | |||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17310186 |
tatgggagattgttgactcccaggagcaagagacacagggttcacatacaagataaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacg |
17310087 |
T |
|
| Q |
301 |
tactcctccta |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
17310086 |
tactcctccta |
17310076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 318
Target Start/End: Original strand, 30214241 - 30214551
Alignment:
| Q |
7 |
agttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactagagacca |
106 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
30214241 |
agttttgttacaatattgcaggctcagttcaaggacaccgattacaacatgaagttgcatttgaaggaaaaattccggcaatttgttttaccagagacca |
30214340 |
T |
|
| Q |
107 |
cctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgctatggg |
206 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30214341 |
cctctatgcgtccaccaccaaataaggtcaccac-caaatgagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttctctatggg |
30214439 |
T |
|
| Q |
207 |
agattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||| |||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
30214440 |
agattgttgactcccaggagcaagagacacatggttcacagacaagatcaacagggacgagtacaaagagtgcacgaaaaagcaacatgtcatctactcc |
30214539 |
T |
|
| Q |
307 |
tcctaagccaac |
318 |
Q |
| |
|
||||||| |||| |
|
|
| T |
30214540 |
tcctaagtcaac |
30214551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 311 - 406
Target Start/End: Original strand, 30214568 - 30214663
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgat |
406 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30214568 |
aagccaacaccggttaaagtcaatataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacagatgtacccggtgat |
30214663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 32 - 384
Target Start/End: Original strand, 10926505 - 10926856
Alignment:
| Q |
32 |
agttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactagagaccacctctatgcgtccatcgccaaataa |
131 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||||| | | |||||| | | |||||| |||| | ||||| |||||||||||| ||||| |||| || |
|
|
| T |
10926505 |
agttcaaggatgctggttacaacatgaaggtgcatatcagagaacaagtttgacaatttattttgttggagacgacctctatgcgtacatcgtcaaaaaa |
10926604 |
T |
|
| Q |
132 |
ggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgctatgggagattgttgactcccaggagcaaga |
231 |
Q |
| |
|
|||||||| ||||||| | | ||||||||||| || | |||||| ||||||| || || | |||||| | ||||||||||||||| || || ||| | |
|
|
| T |
10926605 |
ggtcaccact-aaaggagtttcaaagaaagataaacatatcattcggtcgacaaagcaatcacattcgctctaggagattgttgactctcaagatcaaca |
10926703 |
T |
|
| Q |
232 |
gacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaacaccggttaaagtc |
331 |
Q |
| |
|
|||| | | ||| | |||| |||||| |||| ||||| || ||||||||||||||||||||||| || | ||||| | |||| |||||||||||| |
|
|
| T |
10926704 |
gacacatgcttcacatacaaattcaacaaggacaagtagaaaaagtgcacggaaaagcaacatgtctcccaacactcctcaaccaattccggttaaagtc |
10926803 |
T |
|
| Q |
332 |
aacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaa |
384 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
10926804 |
cacatacctcacaaagaccaaatcccacattggatgcaaaaaattattgaaaa |
10926856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 29810847 - 29810935
Alignment:
| Q |
324 |
ttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtccat |
412 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
29810847 |
ttaaagtcaacatactacacaaagaccaaattccaatttggatgcataaatttattgaaaaggttacagatgtacccggtgatggccat |
29810935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 358
Target Start/End: Complemental strand, 21198794 - 21198690
Alignment:
| Q |
254 |
tcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaacaccggttaaagtcaacataccacacaaagaccaaa |
353 |
Q |
| |
|
||||||||||||||||| || || ||| | |||| |||||| || | || |||||||||||||| ||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
21198794 |
tcaacagggacgagtagaaaaagggcatgaaaaaacaacatttctcataatcctcctaagccaatcccgattaaagtcaacatcccaaacaaagaccaaa |
21198695 |
T |
|
| Q |
354 |
tccca |
358 |
Q |
| |
|
||||| |
|
|
| T |
21198694 |
tccca |
21198690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 22 - 318
Target Start/End: Original strand, 48095455 - 48095750
Alignment:
| Q |
22 |
ttgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactagagaccacctctatgcgtccat |
121 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48095455 |
ttgcaggctcggttcaaggacgccgattacaacatgaagttgcatttgaaggaacaattcgggcaatttgttttaccagagaccacctctatgcgtccac |
48095554 |
T |
|
| Q |
122 |
cgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgctatgggagattgttgactccc |
221 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
48095555 |
cgccaaataaggtcaccac-caaaggagctcctgagaaagataagcaaaacattcgatcgactaggcggtccccttcgctatggaagattgttgaatccc |
48095653 |
T |
|
| Q |
222 |
aggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaac |
318 |
Q |
| |
|
|||||||||||||| |||| ||| |||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48095654 |
aggagcaagagacacagggttcacagacaagatcaactgggacgagtaagaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaac |
48095750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 52970354 - 52970038
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||||||| || ||||||||||||| || |
|
|
| T |
52970354 |
aatgacagttttcttacaatattgcaggctcagttcaagaacgtcgattacaacatgaagttgcatttaaaggaacaatttcgacaatttgttttaccag |
52970255 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
| ||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52970254 |
acaccacctttatgcgtccaccgccaaataaggtcaccac-caaatgagctcctaagaaagataagcaaaacattcgatcgacaaggcggtccccttcgc |
52970156 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| | || ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52970155 |
tatgggagattgttgactcccatgagaaagagacacatggttcacagacaagatcaacagggacgagtaggaagagtgcacagaaaagcaacatgtcacc |
52970056 |
T |
|
| Q |
301 |
tactcctcctaagccaac |
318 |
Q |
| |
|
||||||| ||||| |||| |
|
|
| T |
52970055 |
tactcctactaagtcaac |
52970038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 6160380 - 6160065
Alignment:
| Q |
1 |
aatgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactag |
100 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |||| |||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
6160380 |
aatgacagttttcttacac-attgcaggctcggttccaggacgccgattacaacatgaagttgcatttgaaggaactattccgacaatttgttttaccgc |
6160282 |
T |
|
| Q |
101 |
agaccacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgc |
200 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| |||| |||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| | |
|
|
| T |
6160281 |
agaccatctctatgcgtccaccgccaaataaggtaaccac-caaaggagctccaaagaaagataagcaaagcattctatcgacaaggcgatccccttccc |
6160183 |
T |
|
| Q |
201 |
tatgggagattgttgactcccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacc |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| ||| |||||| |||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
6160182 |
tatgggagattgttgactcacaggagcaagagacacagggttcacagacaaaatcaacagggacgagtagaaagagtgcacggaaaagcaacatgtctcc |
6160083 |
T |
|
| Q |
301 |
tactcctcctaagccaac |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
6160082 |
tactcctcctaagccaac |
6160065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 311 - 412
Target Start/End: Complemental strand, 52970021 - 52969920
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtcc |
410 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || |
|
|
| T |
52970021 |
aagctaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacagatgtacctggtgatggcc |
52969922 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
52969921 |
at |
52969920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 48095767 - 48095868
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgatgtcc |
410 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||| || |
|
|
| T |
48095767 |
aagccaacaccggttaaagtcaatatatcacacaaagaccaaatcctaatttggatgcataagtttattgaaaaggttacagatgtacccgatgatggcc |
48095866 |
T |
|
| Q |
411 |
at |
412 |
Q |
| |
|
|| |
|
|
| T |
48095867 |
at |
48095868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 311 - 406
Target Start/End: Complemental strand, 26755945 - 26755850
Alignment:
| Q |
311 |
aagccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggttacatatgtacccggtgat |
406 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
26755945 |
aagccaacacccgttaaagtccacataccacacaaagaccaaatcccaatttggatgcaatactttattgaaaaggttacagatgtacccggtgat |
26755850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 6160046 - 6159989
Alignment:
| Q |
313 |
gccaacaccggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcat |
370 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
6160046 |
gccaacacccgttaaagtcgacataccacacaaagatcaaatcccaattttgatgcat |
6159989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 25478533 - 25478287
Alignment:
| Q |
3 |
tgacagttttcttaaaatattgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactagag |
102 |
Q |
| |
|
|||||| ||| |||||| |||| |||| | ||||||| | | |||||||||||||| || | | | || ||||||||| | || |||||||| | ||| |
|
|
| T |
25478533 |
tgacagattttttaaaacattgtaggccccgttcaagaacgttgattacaacatgaacttacgtatcaaagaacaattc-gacagtttgttttgccagaa |
25478435 |
T |
|
| Q |
103 |
accacctctatgcgtccatcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagcaaagcattcgatcgacaaggcggtccccttcgcta |
202 |
Q |
| |
|
|| ||||||||||||||| || |||| ||||||||| ||| ||||||| |||||| |||| || |||||| ||||||| || || |||||||| |
|
|
| T |
25478434 |
actacctctatgcgtccaccgtcaaaaaaggtcacc-cctaaaagagctccaaagaaaaataaacatttcattcggtcgacaaagcaatcgccttcgctc |
25478336 |
T |
|
| Q |
203 |
tgggagattgttgactcccaggagcaagagacatagggctcatagacaa |
251 |
Q |
| |
|
|||||||||||||| |||||||| ||| | ||| ||| |||||||||| |
|
|
| T |
25478335 |
tgggagattgttgaatcccaggaacaacaaacacaggcttcatagacaa |
25478287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 25478251 - 25478186
Alignment:
| Q |
322 |
ggttaaagtcaacataccacacaaagaccaaatcccaatttggatgcataaatttattgaaaaggt |
387 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
25478251 |
ggttaaagtccacataccacacaaagaacaaatcccgcattgcatgcatgaatttattgaaaaggt |
25478186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 6157485 - 6157447
Alignment:
| Q |
374 |
tttattgaaaaggttacatatgtacccggtgatgtccat |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
6157485 |
tttattgaaaaggttacagatgtacccggtgatggccat |
6157447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 340
Target Start/End: Complemental strand, 260595 - 260275
Alignment:
| Q |
21 |
attgcaggctcagttcaaggatgccgattacaacatgaagttgcatttgaaggaacaattccggcaatttgttttactagagaccacctctatgcgtcca |
120 |
Q |
| |
|
|||| |||||| ||||||||| || ||||||||||||||| | ||| |||| ||||||| | |||||||||| | | ||| | ||||||||| ||| |
|
|
| T |
260595 |
attgtaggctcggttcaaggaggctgattacaacatgaaggttcatatgaaaaaacaatttcaataatttgttttgccattgacaaactctatgcggcca |
260496 |
T |
|
| Q |
121 |
tcgccaaataaggtcaccaaacaaaggagctcctaagaaagataagc--aaagcattcgatcgacaaggcggtccccttcgctatgggagattgttgact |
218 |
Q |
| |
|
||||||| |||||||||| | ||||| |||| ||||||||||| | | | | || | || |||| || || ||||||| |||||| ||| |||| |
|
|
| T |
260495 |
ccgccaaaaaaggtcaccaca-aaaggggctcgaaagaaagataaacatatatcttttggtcaacaaagcaatcatcttcgctttgggagcatgtagact |
260397 |
T |
|
| Q |
219 |
cccaggagcaagagacatagggctcatagacaatatcaacagggacgagtaggaagagtgcacggaaaagcaacatgtcacctactcctcctaagccaac |
318 |
Q |
| |
|
|| ||| | | ||||| | | |||||||||| |||||| ||| ||||| || |||||||||||||| |||||||| |||| ||||||||| |||| |
|
|
| T |
260396 |
tccgggatccacagacacaagcttcatagacaaattcaacatggaaaagtagaaaaagtgcacggaaaagtaacatgtctcctaatcctcctaatccaat |
260297 |
T |
|
| Q |
319 |
accggttaaagtcaacatacca |
340 |
Q |
| |
|
|| || ||||||||||||||| |
|
|
| T |
260296 |
tccagtcaaagtcaacatacca |
260275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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