View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12091_low_5 (Length: 410)
Name: NF12091_low_5
Description: NF12091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12091_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 36505571 - 36505972
Alignment:
| Q |
1 |
gattcttcataaaaggttttgccatcaag----------atttcaactccgttgggctcaattgttttatacaacctgaaggtatatcgtagtggtctgc |
90 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36505571 |
gattcttcataaaaggttttgccatcaagcttttcaccgatttcaactccgttgggctcaattgttttatacaacctgaaggtatatcgtagtggtctgc |
36505670 |
T |
|
| Q |
91 |
atcacttggcctaactcccaaccaataaatgttgggagttgtcaagttttcactgtcgtacgccattttttgggaccccttgttatagattgttaatatg |
190 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36505671 |
atcacatggcctaactcccaaccaataaatgttgggagttgttaagttttcactgtcgtacgccattttttgggaccccttgttatagattgttaatatg |
36505770 |
T |
|
| Q |
191 |
cggaatccgtataaatctccatcaacaagtgccaataccggcaactttaaatccaaacttagcttcctcactaattttctgctgaaaacatccggtaccc |
290 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36505771 |
cggaatccgtataaatctccatcaacaagtgccaataccggcaactttaaatccaaacttagcttcctcactaattttctgctgcaaacatccggtaccc |
36505870 |
T |
|
| Q |
291 |
cggatccagcgactatgatacacgggaagcgctgctcaaatccagccgaatgaaggcttacaagtgtggcaacactttcaaccaacaaaatgaagagtgc |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36505871 |
cggatccagcgactatgatacacgggaagcgctgctcaaatccagccgaatgaaggcttacaagtgtggcaacactttcaaccaacaaaatgaagagtgc |
36505970 |
T |
|
| Q |
391 |
tt |
392 |
Q |
| |
|
|| |
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|
| T |
36505971 |
tt |
36505972 |
T |
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