View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12091_low_6 (Length: 400)
Name: NF12091_low_6
Description: NF12091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12091_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 26 - 389
Target Start/End: Complemental strand, 2914569 - 2914206
Alignment:
| Q |
26 |
tattgactcttcacaatcacatcatagatcctttccaccctttcctcttctatctcagttatcaatcgaaggatgtcagaggttgacttgcatgcccact |
125 |
Q |
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| T |
2914569 |
tattaactctacacaatcacgccatttatccttacctccttttcctcttctttctcaattatcaatcgaaggatgtcggaagttgacttgcatgcctgct |
2914470 |
T |
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| Q |
126 |
tttccaaaacttgacaaaagtttggagttaaatggtagtcatgtggaggcattgaatgcaacactaaacaatcagagtctctcatttcctcctctttcaa |
225 |
Q |
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| T |
2914469 |
tttacaaaacttgacaagagattgatgttaaatggtactcatgtagaggccctgaatgcaacactaaacaatcagagtgtctcatttcctcctctttcca |
2914370 |
T |
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| Q |
226 |
tgctcaaatccctgtgtattggtgggcacaaacttgctgtctataacatctcagaaaattggatgcaaaatcttccttctctccaacatcttcaaattga |
325 |
Q |
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|||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| || |
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| T |
2914369 |
tgctcaaatctctgtgtattggtggacacaaacttcctgtctataacatctcagaaaattggatgcataatcttctttctctccaacatcttcaaataga |
2914270 |
T |
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| Q |
326 |
acttttttcaagtcaacaagttcatgaaattgcaatttggtttaataacaacttcaactgtctc |
389 |
Q |
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| T |
2914269 |
acatttttcaagtcaacaagttcatgaaattgcaatttggtttaatgaggacttcaactgtctc |
2914206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 176 - 389
Target Start/End: Complemental strand, 2909480 - 2909267
Alignment:
| Q |
176 |
attgaatgcaacactaaacaatcagagtctctcatttcctcctctttcaatgctcaaatccctgtgtattggtgggcacaaacttgctgtctataacatc |
275 |
Q |
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| T |
2909480 |
attgaatgcaacactaaacaatcagagtctctcatttcctcctctttccatgctcaaatccctgtgtattggtgggcacaaacttgctgtctataacatc |
2909381 |
T |
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| Q |
276 |
tcagaaaattggatgcaaaatcttccttctctccaacatcttcaaattgaacttttttcaagtcaacaagttcatgaaattgcaatttggtttaataaca |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2909380 |
tcagaaaattggatgcaaaatcttccttctctccaacatcttcaaattgaacttttttcaagtcaacaagttcatgaaattgcaatttggtttaataaca |
2909281 |
T |
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| Q |
376 |
acttcaactgtctc |
389 |
Q |
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|||||||||||||| |
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| T |
2909280 |
acttcaactgtctc |
2909267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 2909618 - 2909504
Alignment:
| Q |
19 |
gagatggtattgactcttcacaatcacatcatagatcctttccaccctttcctcttctatctcagttatcaatcgaaggatgtcagaggttgacttgcat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2909618 |
gagatggtattgactcttcacaatcacatcatagatcctttccaccctttcctcttctatctcagttatcaatcgaaggatgtcagaggttgacttgcat |
2909519 |
T |
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| Q |
119 |
gcccacttttccaaa |
133 |
Q |
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||||||||||||||| |
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| T |
2909518 |
gcccacttttccaaa |
2909504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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