View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12091_low_7 (Length: 399)

Name: NF12091_low_7
Description: NF12091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12091_low_7
NF12091_low_7
[»] chr5 (3 HSPs)
chr5 (15-399)||(34824531-34824915)
chr5 (1-51)||(24033087-24033137)
chr5 (15-64)||(17666003-17666052)
[»] scaffold0038 (1 HSPs)
scaffold0038 (1-65)||(23357-23421)
[»] chr8 (2 HSPs)
chr8 (1-61)||(5326180-5326240)
chr8 (1-61)||(43856392-43856452)
[»] chr6 (3 HSPs)
chr6 (1-65)||(28222859-28222923)
chr6 (1-62)||(1100249-1100310)
chr6 (1-61)||(10483546-10483606)
[»] chr7 (7 HSPs)
chr7 (1-60)||(12264055-12264114)
chr7 (1-71)||(30388517-30388587)
chr7 (1-60)||(19828127-19828186)
chr7 (1-66)||(27510267-27510332)
chr7 (1-61)||(24061339-24061399)
chr7 (1-61)||(30940771-30940831)
chr7 (1-61)||(36389676-36389736)
[»] chr3 (8 HSPs)
chr3 (1-48)||(44945671-44945718)
chr3 (1-67)||(46795939-46796005)
chr3 (1-61)||(40192156-40192216)
chr3 (1-51)||(11236438-11236487)
chr3 (15-64)||(33606963-33607012)
chr3 (4-48)||(22857407-22857451)
chr3 (1-61)||(37488470-37488530)
chr3 (1-61)||(48739754-48739814)
[»] chr2 (3 HSPs)
chr2 (1-51)||(40864409-40864459)
chr2 (1-58)||(5398117-5398174)
chr2 (1-65)||(16385052-16385116)
[»] chr4 (9 HSPs)
chr4 (1-61)||(44602485-44602545)
chr4 (15-61)||(3157241-3157287)
chr4 (1-51)||(56087964-56088014)
chr4 (8-65)||(4105723-4105780)
chr4 (1-61)||(7686272-7686332)
chr4 (1-61)||(29329833-29329893)
chr4 (1-65)||(42231508-42231572)
chr4 (1-61)||(49757294-49757354)
chr4 (1-61)||(55853118-55853178)
[»] chr1 (5 HSPs)
chr1 (1-64)||(25034901-25034964)
chr1 (1-51)||(7180624-7180674)
chr1 (3-51)||(6712121-6712169)
chr1 (9-61)||(6893255-6893307)
chr1 (1-61)||(48638532-48638592)
[»] scaffold0366 (1 HSPs)
scaffold0366 (1-65)||(870-934)
[»] scaffold0275 (1 HSPs)
scaffold0275 (15-67)||(8815-8867)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-61)||(315649-315709)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Original strand, 34824531 - 34824915
Alignment:
Q  15 ctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaattaaaaaattgatctttgacaaatctaaactttacaagtaaaactaagcca 114  Q
    ||||||||||||||||||||  |||||||||||| || | || ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  34824531 ctgcatataaaacgcaatatctctaccgactgagttaagctcgcgggaattaaaaaattgatctttgacaaacctaaactttacaagtaaatctaagcca 34824630  T
Q  115 aaaataaacattattcagtttcttgtgtatatatataagcatcaaagatctgcagcaatatacataatgatcaacttgattgaacactctcatatctaat 214  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34824631 aaaataaatattattcagtttcttgtgtatatatataagcatcaaagatctgcagcaatatacataatgatcaacttgattgaacactctcatatctaat 34824730  T
Q  215 agtatgacgtctaagccacaactgatacataatagtattaaacgcatcaaacggctgagcaggtcgattccaccgtaagtgcttactccccaccacacct 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34824731 agtatgacgtctaagccacaactgatacataatagtattaaacgcatcaaacggctgagcaggtcgattccaccgtaagtgcttactccccaccacacct 34824830  T
Q  315 aatcttctcatatttcccttcctttccctccacgtgtcagtttcaatcttcacaccacttttcacaaacaccgccatttcactcc 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||    
T  34824831 aatcttctcatatttcccttcctttccctccacgtgtcagtttcaatattcacaccacttttcacaaacacagccatttccctcc 34824915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 24033137 - 24033087
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagcta 51  Q
    |||||| |||||| |||||||||||| ||||||| |||||| |||||||||    
T  24033137 tcgaaccccggcccctgcatataaaatgcaatatccctaccaactgagcta 24033087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 17666052 - 17666003
Alignment:
Q  15 ctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaat 64  Q
    |||||||||| | |||||||||||||| ||||||||| | ||||||||||    
T  17666052 ctgcatataatatgcaatattcctaccaactgagctaagctcacgggaat 17666003  T

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Target: scaffold0038 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23421 - 23357
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaatt 65  Q
    |||||| ||||||||||||||||| | ||||||| |||||| |||||| || |||||||||||||    
T  23421 tcgaaccccggcctctgcatataatatgcaatatccctaccaactgagttaagttcacgggaatt 23357  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 5326180 - 5326240
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||||||||||||||||||||||| |||||||  ||||| ||||||||| | |||||||    
T  5326180 tcgaacaccggcctctgcatataaaatgcaatatctctaccaactgagctaagctcacggg 5326240  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43856392 - 43856452
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||| |||||| |||||||||||| ||||||| |||||| |||||| || | |||||||    
T  43856392 tcgaaccccggcccctgcatataaaatgcaatatccctaccaactgagttaagctcacggg 43856452  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 28222923 - 28222859
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaatt 65  Q
    |||||| ||||||||||||||||| | ||||||| |||||| |||||| || |||||||||||||    
T  28222923 tcgaaccccggcctctgcatataatatgcaatatccctaccaactgagttaagttcacgggaatt 28222859  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1100249 - 1100310
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggga 62  Q
    |||||||||| |  |||||||||||| || |||| |||||| ||||||||| ||||||||||    
T  1100249 tcgaacaccgactactgcatataaaatgctatatccctaccaactgagctaagttcacggga 1100310  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10483546 - 10483606
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||| ||| || |||||||||||| ||||||| |||||| ||||||||| | |||||||    
T  10483546 tcgaaccccgacccctgcatataaaatgcaatatccctaccaactgagctaagatcacggg 10483606  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12264114 - 12264055
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacgg 60  Q
    |||||| |||||| |||||||||||| ||||||| |||||| ||||||||| ||||||||    
T  12264114 tcgaactccggcccctgcatataaaatgcaatatccctaccaactgagctaagttcacgg 12264055  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30388517 - 30388587
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaattaaaaaa 71  Q
    |||||| |||||| |||||||||| | ||||||| |||||| ||||||||| | ||||| |||||||||||    
T  30388517 tcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagctcacgagaattaaaaaa 30388587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19828186 - 19828127
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacgg 60  Q
    |||||| ||| ||||||||||||||| || |||| |||||| ||||||||| ||||||||    
T  19828186 tcgaaccccgacctctgcatataaaatgcgatatccctaccaactgagctaagttcacgg 19828127  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27510267 - 27510332
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaatta 66  Q
    |||||| |||||  |||||||||| | ||||||| |||||| ||||||||| | ||||||||||||    
T  27510267 tcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctaagctcacgggaatta 27510332  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24061339 - 24061399
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||| |||||  |||||||||| | |||||||||||||| ||||||||| | |||||||    
T  24061339 tcgaaccccggctcctgcatataatatgcaatattcctaccaactgagctaagctcacggg 24061399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30940831 - 30940771
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||| ||||||||||||||||| | |||||||  ||||| ||||||||| | |||||||    
T  30940831 tcgaaccccggcctctgcatataatatgcaatatcactaccaactgagctaagctcacggg 30940771  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36389676 - 36389736
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||| |||||| ||||||||||||  |||||| |||||| ||||||||| | |||||||    
T  36389676 tcgaactccggcccctgcatataaaatacaatatccctaccaactgagctaagctcacggg 36389736  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 44945671 - 44945718
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgag 48  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||||||    
T  44945671 tcgaactccggcctctgcatataatacgcaatattcctaccaactgag 44945718  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 46795939 - 46796005
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaattaa 67  Q
    |||||| |||||| |||||||||||| ||||||| |||||| ||||||||| | ||||||| |||||    
T  46795939 tcgaaccccggcccctgcatataaaatgcaatatccctaccaactgagctaagctcacggggattaa 46796005  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40192216 - 40192156
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||||||| ||||||||||||| | ||||||| |||||| ||||||||| | |||||||    
T  40192216 tcgaacaccgacctctgcatataatatgcaatatccctaccaactgagctaagctcacggg 40192156  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11236438 - 11236487
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagcta 51  Q
    |||||| |||||| |||||||||||| |||||||||||||| |||||||||    
T  11236438 tcgaaccccggcc-ctgcatataaaaagcaatattcctaccaactgagcta 11236487  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 33606963 - 33607012
Alignment:
Q  15 ctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaat 64  Q
    |||||||||||| ||||||| |||||| | ||||||| ||||||||||||    
T  33606963 ctgcatataaaatgcaatatccctaccaattgagctaagttcacgggaat 33607012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 22857451 - 22857407
Alignment:
Q  4 aacaccggcctctgcatataaaacgcaatattcctaccgactgag 48  Q
    |||| |||||||||||||||| | |||||||||||||| ||||||    
T  22857451 aacatcggcctctgcatataatatgcaatattcctaccaactgag 22857407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37488470 - 37488530
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||| |||||| |||||||||||| || |||| |||||| ||||||||| | |||||||    
T  37488470 tcgaaccccggcccctgcatataaaatgcgatatccctaccaactgagctaagctcacggg 37488530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 48739754 - 48739814
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||| || ||| |||||||||||| ||||||| |||||| ||||||||| | |||||||    
T  48739754 tcgaaccccagcccctgcatataaaatgcaatatccctaccaactgagctaagctcacggg 48739814  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40864459 - 40864409
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagcta 51  Q
    |||||| |||||| |||||||||||| |||||||||||||| |||||||||    
T  40864459 tcgaaccccggcccctgcatataaaatgcaatattcctaccaactgagcta 40864409  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5398117 - 5398174
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcac 58  Q
    |||||| || |||||||||||||||| | ||||| |||||| ||||||||| ||||||    
T  5398117 tcgaaccccagcctctgcatataaaatgtaatatccctaccaactgagctaagttcac 5398174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 16385052 - 16385116
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaatt 65  Q
    |||||| |||| |||||||||||||| ||||||| | |||| ||||||||| | ||| |||||||    
T  16385052 tcgaaccccggtctctgcatataaaatgcaatatccataccaactgagctaagctcatgggaatt 16385116  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 44602545 - 44602485
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||| |||||| |||||||||||| ||||||| |||||| ||||||||| | |||||||    
T  44602545 tcgaaccccggcccctgcatataaaatgcaatatccctaccaactgagctaagctcacggg 44602485  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 3157241 - 3157287
Alignment:
Q  15 ctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||||||| | |||||||||||||| ||||||||| |||||||||    
T  3157241 ctgcatataatatgcaatattcctaccaactgagctaagttcacggg 3157287  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 56087964 - 56088014
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagcta 51  Q
    |||||| |||||| |||||||||||| ||||||| |||||| |||||||||    
T  56087964 tcgaaccccggcccctgcatataaaatgcaatatccctaccaactgagcta 56088014  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 4105780 - 4105723
Alignment:
Q  8 ccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaatt 65  Q
    |||| |||||||||||||| ||||||| |||| | ||||||||| | |||||||||||    
T  4105780 ccggtctctgcatataaaatgcaatatccctatcaactgagctaagctcacgggaatt 4105723  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7686272 - 7686332
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||| |||||| |||||||||||| |||||||  ||||| ||||||||| | |||||||    
T  7686272 tcgaaccccggcccctgcatataaaatgcaatatctctaccaactgagctaagctcacggg 7686332  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29329833 - 29329893
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||| |||||| || |||||||||  ||||||||||||| ||||||||| | |||||||    
T  29329833 tcgaaccccggcccctacatataaaatacaatattcctaccaactgagctaagctcacggg 29329893  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42231572 - 42231508
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaatt 65  Q
    |||||| |||||  |||||||||| | |||||||||||||| |||||| || | |||||||||||    
T  42231572 tcgaaccccggctcctgcatataatatgcaatattcctaccaactgagttaagctcacgggaatt 42231508  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 49757294 - 49757354
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||| |||||  |||||||||| | |||||||||||||| ||||||||| | |||||||    
T  49757294 tcgaaccccggctcctgcatataatatgcaatattcctaccaactgagctatgctcacggg 49757354  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 55853118 - 55853178
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    ||||||||||||| |||||||||| | |||||||  ||||| ||||||||| | |||||||    
T  55853118 tcgaacaccggcccctgcatataatatgcaatatctctaccaactgagctaagctcacggg 55853178  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25034964 - 25034901
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaat 64  Q
    |||||| | |||| || ||||||||| |||||||||||||| ||||||||| | ||||||||||    
T  25034964 tcgaactctggcccctacatataaaatgcaatattcctaccaactgagctaagctcacgggaat 25034901  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7180624 - 7180674
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagcta 51  Q
    |||||| |||||| |||||||||| | |||||||||||||| |||||||||    
T  7180624 tcgaactccggcccctgcatataatatgcaatattcctaccaactgagcta 7180674  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 6712121 - 6712169
Alignment:
Q  3 gaacaccggcctctgcatataaaacgcaatattcctaccgactgagcta 51  Q
    |||| |||||| |||||||||||| ||||||| |||||| |||||||||    
T  6712121 gaaccccggcccctgcatataaaatgcaatatacctaccaactgagcta 6712169  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 6893255 - 6893307
Alignment:
Q  9 cggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    ||||| |||||||||||| ||||||| |||||| ||||||||| | |||||||    
T  6893255 cggcccctgcatataaaatgcaatatccctaccaactgagctaagctcacggg 6893307  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 48638592 - 48638532
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    |||||| || ||| |||||||||||| ||||||| |||||| ||||||||| | |||||||    
T  48638592 tcgaaccccagcccctgcatataaaatgcaatatccctaccaactgagctaagctcacggg 48638532  T

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Target: scaffold0366 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 870 - 934
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaatt 65  Q
    |||||| |||||  |||||||||| | ||||||| |||||| ||||||||| | |||||||||||    
T  870 tcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctaagctcacgggaatt 934  T

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Target: scaffold0275 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 8867 - 8815
Alignment:
Q  15 ctgcatataaaacgcaatattcctaccgactgagctaggttcacgggaattaa 67  Q
    |||||||||||| ||||||| |||||| ||||||||| | ||||||| |||||    
T  8867 ctgcatataaaatgcaatatccctaccaactgagctaagctcacggggattaa 8815  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 315709 - 315649
Alignment:
Q  1 tcgaacaccggcctctgcatataaaacgcaatattcctaccgactgagctaggttcacggg 61  Q
    ||||||| || || |||||||||||| ||||||| | |||| ||||||||| |||||||||    
T  315709 tcgaacatcgacccctgcatataaaatgcaatatccttaccaactgagctaagttcacggg 315649  T

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