View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12092_high_1 (Length: 513)

Name: NF12092_high_1

Description: NF12092

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12092_high_1

[»] scaffold0062 (4 HSPs)

Alignment Details

Target: scaffold0062 (Bit Score: 459; Significance: 0; HSPs: 4)

Name: scaffold0062

Description:

Target: scaffold0062; HSP #1

Raw Score: 459; E-Value: 0

Query Start/End: Original strand, 19 - 493

Target Start/End: Original strand, 5541 - 6015

Alignment:

Q	19	aagtggcagaagtataattgatggtattgacatcaattatgagcacatcctcacaagtgttgataaagatcgatgtcgtttcgcggagtgcttagggcaa	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5541	aagtggcagaagtataattgatggtattgacatcaattatgagcacatcctcacaagtgttgataaagatcgatgtcgtttcgcggagtgcttagggcaa	5640	T

Q	119	gttataacagatctcaagaaagatagagatctgaatatcaatgttgtgtccattgctccatccgagcaaaatgattcgcattaccgcaaattgtattggg	218	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5641	gttataacagatctcaagaaagatagagatctgaatatcaatgttgtgtccattgctccatccgagcaaaatgattcgcattaccgcaaattgtattggg	5740	T

Q	219	aaaacaaggacaatattaatttggttgactacaagttatacaaccaaactaaaattgtacaaacatctgaagaatttgtgaaactttattcaaagatagc	318	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5741	aaaacaaggacaatattaatttggttgactacaagttatacaaccaaactaaaattgtacaaacatctgaagaatttgtgaaactttattcaaagatagc	5840	T

Q	319	gaatgactactctcctgaaaaattccttccaggaattagcaccgacccgggtgacaccgagcctgcagataagattattaagatgccaagggagatcttc	418	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5841	gaatgactactctcctgaaaaattccttccaggaattagcaccgacccgggtgacaccgagcctgcagataagattattaagatgccaagggagatcttc	5940	T

Q	419	attgctggctgcaaacatcttatgcaattctccacactccctggtatttttctatggaacgctcatgactctgtg	493	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5941	attgctggatgcaaacatcttatgcaatactccacactccctggtatttttctttggaatgctcatgactctgtg	6015	T

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Target: scaffold0062; HSP #2

Raw Score: 33; E-Value: 0.000000003

Query Start/End: Original strand, 398 - 490

Target Start/End: Original strand, 16242 - 16334

Alignment:

Q	398	aagatgccaagggagatcttcattgctggctgcaaacatcttatgcaattctccacactccctggtatttttctatggaacgctcatgactct	490	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\| \| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	16242	aagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttggaacgctgatgactct	16334	T

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Target: scaffold0062; HSP #3

Raw Score: 33; E-Value: 0.000000003

Query Start/End: Original strand, 398 - 490

Target Start/End: Original strand, 26410 - 26502

Alignment:

Q	398	aagatgccaagggagatcttcattgctggctgcaaacatcttatgcaattctccacactccctggtatttttctatggaacgctcatgactct	490	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\| \| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	26410	aagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttggaacgctgatgactct	26502	T

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Target: scaffold0062; HSP #4

Raw Score: 33; E-Value: 0.000000003

Query Start/End: Original strand, 398 - 490

Target Start/End: Original strand, 36576 - 36668

Alignment:

Q	398	aagatgccaagggagatcttcattgctggctgcaaacatcttatgcaattctccacactccctggtatttttctatggaacgctcatgactct	490	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\| \| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	36576	aagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttggaacgctgatgactct	36668	T

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