View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12093_high_15 (Length: 288)
Name: NF12093_high_15
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12093_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 36606243 - 36606510
Alignment:
| Q |
7 |
agtggtgttcaccttggataattgtggcagatggcgacattctccatgcttgggcaataaactgacataaagattacaaatgacattatccatgcttgat |
106 |
Q |
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| T |
36606243 |
agtggtgttcaccttggataattgtggcagatggcgacattctccaagcttgggcaataaacggacataaagattacaaatgacattctccatgcttgat |
36606342 |
T |
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| Q |
107 |
ataaaacacttataatgtgaaggtatgtattgtagagatcattttggccatgaagcaaaagtaggtatataacacgagcatggagaatgctagccacatg |
206 |
Q |
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| T |
36606343 |
ataaaacacttataatgtgaaggtatgtattgtatagatcattttggccatgaagcaaaagtaggtatataacaggagcatggagaatgctaaccacatg |
36606442 |
T |
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| Q |
207 |
tagtgatttgagatgacctgaccagtcatactcattgataatgatttatcatgtgaccttaacctatg |
274 |
Q |
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| T |
36606443 |
tagtgatttgagatgacctgaccagtcatactcattaataatgatttatcatgtgaccttaacttatg |
36606510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 27539808 - 27539604
Alignment:
| Q |
12 |
tgttcaccttggataattgtggcagatggcgacattctccatgcttgggcaataaactgacataaagattacaaatgacattatccatgcttgat----- |
106 |
Q |
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| T |
27539808 |
tgttcaccttggataattgtggcagatggcgacattctccatgtttgggcaataaactgacataaagattacaaatgacattatctatgcttgatataat |
27539709 |
T |
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| Q |
107 |
-ataaaacacttataatgtgaaggtatgtattgtagagatcattttggccatgaagcaaaagtaggtatataacacgagcatggagaatgctagccacat |
205 |
Q |
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| T |
27539708 |
tataaaacacttatgatgtgaaggtatgtatcgtagagatcatattggttgtgaagcaaaagtagg--tatagcaagagcatagtgaatgctaaccacat |
27539611 |
T |
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| Q |
206 |
gtagtga |
212 |
Q |
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| T |
27539610 |
gtagtga |
27539604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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