View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12093_high_26 (Length: 239)

Name: NF12093_high_26
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12093_high_26
NF12093_high_26
[»] chr5 (10 HSPs)
chr5 (1-225)||(32557325-32557549)
chr5 (27-215)||(32710575-32710763)
chr5 (22-215)||(32763327-32763523)
chr5 (32-203)||(25477756-25477927)
chr5 (45-189)||(32748123-32748267)
chr5 (24-185)||(32768361-32768521)
chr5 (22-190)||(28475217-28475385)
chr5 (27-181)||(32651304-32651458)
chr5 (45-187)||(32749643-32749784)
chr5 (139-189)||(32858865-32858915)
[»] chr1 (2 HSPs)
chr1 (23-203)||(17583835-17584015)
chr1 (22-168)||(17592675-17592821)
[»] chr7 (2 HSPs)
chr7 (41-189)||(37577566-37577714)
chr7 (35-121)||(7969384-7969470)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 32557325 - 32557549
Alignment:
Q  1 gatgtctgatctacatctaggggaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagctt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557325 gatgtctgatctacttctaggggaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagctt 32557424  T
Q  101 attggcaaacatcagacgttgttggtgcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557425 attggcaaacatcagacgttgttggtgcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaag 32557524  T
Q  201 ggggtcatctttccacaaccatgtg 225  Q
    |||||||||||||||||||||||||    
T  32557525 ggggtcatctttccacaaccatgtg 32557549  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 32710763 - 32710575
Alignment:
Q  27 cggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggt 126  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||||||| || | |||| |||||  |||| ||||||| ||||||| ||| || |    
T  32710763 cggaggatgaggttgagggttgacttctcttggatgttgtaattggcaagggtctgacagtcagctagttccttactggcaaagatcagacattgctgat 32710664  T
Q  127 gcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaagggggtcatctttcca 215  Q
     |||||||||  ||||||| ||  |||||||  ||||||  |||||||| |||| ||||||||||||||||| |||| || ||||||||    
T  32710663 ccactgggattctttccttctctcgaatcttcgccttcaagtttgctattgtgtatgaactctccaccttcagggggatcgtctttcca 32710575  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 32763523 - 32763327
Alignment:
Q  22 ggaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagctta---ttggcaaacatcagacg 118  Q
    ||||||||| || |||||||| |||||  ||||||||||||||||||| |||||||||| || |||| ||||   |||||   | | | |  ||||||||    
T  32763523 ggaggcggatgaggaggtggatggttgaattctcttggatgttgtaattggcaagggtaaggttgtcctctaactgcttaccgtcgtcgatgatcagacg 32763424  T
Q  119 ttgttggtgcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaagggggtcatctttcca 215  Q
    ||| | ||||| |||||||  |||||||||||||||||| | |||||||||| |||| |||||||||||||| ||| |||||||| |||||||||||    
T  32763423 ttgctcgtgcattgggatcccttccttgtcaagaatctttttcttcacattttctattgtgtctgaactctcaaccctcaaggggatcatctttcca 32763327  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 25477927 - 25477756
Alignment:
Q  32 gatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcact 131  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||| ||| |||| ||| |||||| |||||  || ||| ||||||||||| | || ||||    
T  25477927 gatgaggtggatggttgacttctcttggatgttgtaattggcaatggtctggcagtcgtctagttgcttaccggaaaatatcagacgttgatcgttcact 25477828  T
Q  132 gggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaagggg 203  Q
     ||  | |||||||||||| |||||| ||||||||| |  ||||||||||||||||||  ||| ||||||||    
T  25477827 tggtacttttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccctcaagggg 25477756  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 189
Target Start/End: Complemental strand, 32748267 - 32748123
Alignment:
Q  45 gttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatcgtttcct 144  Q
    |||| |||||||||||||||||||  ||||||||| |||| ||  |||||| |||| |||| ||| | ||||||||||||||| || ||||||  |||||    
T  32748267 gttgacttctcttggatgttgtaactggcaagggtctggcggttctctagttgcttcttggaaaagaacagacgttgttggtggacagggatcccttcct 32748168  T
Q  145 tgtcaagaatcttatccttcacatttgctatcgtgtctgaactct 189  Q
    ||||  ||| ||| | |||||||||   |||||||||||||||||    
T  32748167 tgtcctgaacctttttcttcacattgagtatcgtgtctgaactct 32748123  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 32768521 - 32768361
Alignment:
Q  24 aggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgtt 123  Q
    ||||||| || || ||| ||| ||| |||||||||||||||| ||| ||||||||| | | |||||||| || || ||  |||||| |||| ||||||||    
T  32768521 aggcggatgacgacgtgcaggattgacttctcttggatgttgcaattggcaagggtctcgttgtcatctcgttgcctaccggcaaatatcaaacgttgtt 32768422  T
Q  124 ggtgcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaa 185  Q
    |||| |||||||||  |||||||| || || ||| | |||||||||  ||||||||||||||    
T  32768421 ggtgtactgggatcccttccttgt-aaaaaacttcttcttcacattaactatcgtgtctgaa 32768361  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 28475385 - 28475217
Alignment:
Q  22 ggaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttg 121  Q
    ||||||||||||  ||| ||| |||||  ||||||||||||||||||  |||||||||| |  |||| |||||| |||||  | |    || ||||||||    
T  28475385 ggaggcggaggacaaggaggatggttgagttctcttggatgttgtaactggcaagggtaagattgtcctctagttgcttaccgtcgttgattagacgttg 28475286  T
Q  122 ttggtgcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctc 190  Q
     | ||| | |||||||  |||||||||||||||||| | ||||||||   |||||||||||||||||||    
T  28475285 ctcgtgtattgggatcccttccttgtcaagaatcttcttcttcacatcgactatcgtgtctgaactctc 28475217  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 32651304 - 32651458
Alignment:
Q  27 cggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggt 126  Q
    ||||| |||||||| | ||||| ||| ||||||||| |||||| ||||||| |  ||| ||| |||||| | |||   ||||| |||| |||||| | ||    
T  32651304 cggagaatgaggtgaatggttgacttatcttggatgatgtaatcggcaaggatccggccgtcctctagttgtttaccagcaaagatcaaacgttggtcgt 32651403  T
Q  127 gcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtc 181  Q
     ||||||| || |||||| ||||| |||||| |||||||||||| |||| |||||    
T  32651404 acactggggtcttttcctcgtcaacaatcttctccttcacattttctatggtgtc 32651458  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 32749784 - 32749643
Alignment:
Q  45 gttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatcgtttcct 144  Q
    |||| ||||||||||||| |||||| ||||||| | ||||  || |||| |||||||  | |||| |  ||||| ||||||||||||||||||| ||||     
T  32749784 gttgacttctcttggatgctgtaattggcaaggatttggcgttcctctattagcttaccgtcaaagaatagacgctgttggtgcactgggatcgcttcca 32749685  T
Q  145 tgtcaagaatcttatccttcacatttgctatcgtgtctgaact 187  Q
    | |||  | |||| | ||||||||| | |||||||||||||||    
T  32749684 tttcataattcttcttcttcacattag-tatcgtgtctgaact 32749643  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 32858915 - 32858865
Alignment:
Q  139 tttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactct 189  Q
    ||||||||||||||||| | |||||||||||  ||||||||||||||||||    
T  32858915 tttccttgtcaagaatcatctccttcacattgactatcgtgtctgaactct 32858865  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 17584015 - 17583835
Alignment:
Q  23 gaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgt 122  Q
    ||||||||||  ||| || | ||||| |||||||||||||||||||| |||||||||  || |||| |||||| |||||  | |||| |||||||||||     
T  17584015 gaggcggaggcagagatgaatggttgacttctcttggatgttgtaatcggcaagggtccggttgtcctctagttgcttaccgtcaaagatcagacgttgc 17583916  T
Q  123 tggtgcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactctccaccttcaagggg 203  Q
    ||||||||||  ||   |||||||||||||||||| | |||||||||   |||||||||||||||||||||| ||| ||||    
T  17583915 tggtgcactgcaatatcttccttgtcaagaatcttcttcttcacattcattatcgtgtctgaactctccaccctcaggggg 17583835  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 17592821 - 17592675
Alignment:
Q  22 ggaggcggaggatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttg 121  Q
    |||||||||||  || ||||| ||||| |||||||| ||||||||||| | |||||||  ||   |||||||||| ||||  | |||| |||| ||||||    
T  17592821 ggaggcggaggcagacgtggatggttgacttctctttgatgttgtaatcgacaagggtccggtcctcatctagtaccttaccgccaaagatcaaacgttg 17592722  T
Q  122 ttggtgcactgggatcgtttccttgtcaagaatcttatccttcacat 168  Q
     |||||||| |||||  ||||||||||||||||||| | ||||||||    
T  17592721 ctggtgcaccgggatattttccttgtcaagaatcttcttcttcacat 17592675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 37577714 - 37577566
Alignment:
Q  41 gagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatcgtt 140  Q
    |||||||| |||||||||||||| ||||| |||||||||  |||| | |||||||  ||||  |||||| |||||||||||    |||| |||||||  |    
T  37577714 gagggttgacttctcttggatgtggtaattggcaagggtcaggctattatctagttccttaccggcaaagatcagacgttgcatatgcattgggatccct 37577615  T
Q  141 tccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactct 189  Q
    || |||||||||||||| ||||||||||  |||||||||||||||||||    
T  37577614 tcattgtcaagaatcttctccttcacatcggctatcgtgtctgaactct 37577566  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 7969384 - 7969470
Alignment:
Q  35 gaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttg 121  Q
    |||||||||||||| | |||||||||||||| ||| ||||| |||  |||||||||||| | ||||| ||||||| |||||||||||    
T  7969384 gaggtggagggttgacctctcttggatgttgcaattggcaatggtcaggctgtcatctaattgcttactggcaaagatcagacgttg 7969470  T

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