View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12093_high_3 (Length: 650)
Name: NF12093_high_3
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12093_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 18 - 643
Target Start/End: Complemental strand, 36746486 - 36745861
Alignment:
| Q |
18 |
acatttgattaacaaacaaacatacttgtacatagacaagatcagtctcatctatgtattttattgaaagttgcagcaacaatacttgtagggtagctta |
117 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746486 |
acatttgattaacaaacaaacatatatgtacatagacaagatcagtctcatctatgtattttattgaaagttgcagcaacaatacttgtagggtagctta |
36746387 |
T |
|
| Q |
118 |
aagagatccttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatcttaaccgggcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746386 |
aagagatccttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatcttaaccgggcca |
36746287 |
T |
|
| Q |
218 |
gttcggttaagcaaatctggttctttgtttctgctttcgannnnnnnctcgatgtcttccatcttctttgcaaaccttttgaaggctactcttgcctttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746286 |
gttcggttaagcaaatctggttctttgtttctgctttcaatttttttctcgatgtcttccatcttctttgcaaaccttttgaaggctactcttgcctttt |
36746187 |
T |
|
| Q |
318 |
catctgctgtccattcatcattctctcttttccctaagtaaacttcatcagaagcatgccttgacaatatctctatcaccgtaaggtcgatgagagcctc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36746186 |
catctgctgtccattcatcattctctcttttccctaagtaaacttcatcagaagcatgccttgacaatatctctatcaccgtaaggtcaatgagagcctc |
36746087 |
T |
|
| Q |
418 |
ggtctttggtgtgattgttctcaaataagccctttggtcatctttctccatctcttcatattctttggttcccttttcaggaattaacctccttgtcata |
517 |
Q |
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| T |
36746086 |
ggtctttggtgtgattgttctcaaataagccctttggtcatctttctccatctcttcatattctttggttcccttttcaggaattaacctccttgtcata |
36745987 |
T |
|
| Q |
518 |
gttggtcggttcaagattaaaccaccgtaaggatattgtccgaaattgacagctgcgtggaaagcggatgcaagccatatgattattgagcaggattcca |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36745986 |
gttggtcggttcaagattaaaccaccgtaaggatattgtccgaaattgacagctgcgtggaaagcggatgcaagccatatgattattgagcaggattcca |
36745887 |
T |
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| Q |
618 |
ccaactcgttaatcgaattcatctca |
643 |
Q |
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|||||||||||||||||||||||||| |
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| T |
36745886 |
ccaactcgttaatcgaattcatctca |
36745861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 29014439 - 29014396
Alignment:
| Q |
46 |
tacatagacaagatcagtctcatctatgtattttattgaaagtt |
89 |
Q |
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| T |
29014439 |
tacatagacaacatcagtctcatctatgtattttattgaaagtt |
29014396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 355 - 578
Target Start/End: Complemental strand, 42689873 - 42689650
Alignment:
| Q |
355 |
gtaaacttcatcagaagcatgccttgacaatatctctatcaccgtaaggtcgatgagagcctcggtctttggtgtgattgttctcaaataagccctttgg |
454 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||| | |||||| || |||| || ||| || |||||||||||||| |||||| |||| |
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| T |
42689873 |
gtaaacttcatcagaagcatgtcttgacaatatttctatcactgaaaggtcaataagagtctgaaacttcggcgtgattgttctcaagtaagccttttga |
42689774 |
T |
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| Q |
455 |
tcatctttctccatctcttcatattctttggttcccttttcaggaattaacctccttgtcatagttggtcggttcaagattaaaccaccgtaaggatatt |
554 |
Q |
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| ||| |||| || ||||||| | ||||| | ||||||| ||| || || | |||||||| ||||| | || ||||| ||||||||||||| |
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| T |
42689773 |
ggactcttcaccatttcatcatattgtgcagttccttcctcaggaagtaatcttctactgatagttgggcggtttagaataaaaccgccgtaaggatatt |
42689674 |
T |
|
| Q |
555 |
gtccgaaattgacagctgcgtgga |
578 |
Q |
| |
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|||| ||||| ||||||||||||| |
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| T |
42689673 |
gtccaaaattaacagctgcgtgga |
42689650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 42691979 - 42692028
Alignment:
| Q |
359 |
acttcatcagaagcatgccttgacaatatctctatcaccgtaaggtcgat |
408 |
Q |
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|||||||||||||| |||||||||||||| ||||| || | ||||||||| |
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| T |
42691979 |
acttcatcagaagcgtgccttgacaatatttctataacggaaaggtcgat |
42692028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 6361701 - 6361781
Alignment:
| Q |
127 |
ttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatctt |
207 |
Q |
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||||||||| ||||| |||||||| |||||||||||||| ||||| |||| | ||| |||||| |||||| |||||||| |
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| T |
6361701 |
ttagatagagacactgttgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcagagtgtaaggcatctt |
6361781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 6287290 - 6287358
Alignment:
| Q |
139 |
actattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatctt |
207 |
Q |
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|||||||||||| |||||||||||||| ||||| |||| | ||| |||||||||| || |||||||| |
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| T |
6287290 |
actattgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatatggcatctt |
6287358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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