View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12093_low_11 (Length: 376)
Name: NF12093_low_11
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12093_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 24 - 359
Target Start/End: Original strand, 3884399 - 3884733
Alignment:
| Q |
24 |
gcagacaataattagcttaaaacataaattcatcttaagttcaagattcaacacttagttttatcacaaaccttccttgagcatgcatgcaaggttctta |
123 |
Q |
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| T |
3884399 |
gcagacaataattagcttaaaacataaattcatcttaagttcaagattcaacacttagttttatcataaaccttccttgagcatgcatgcaaggttctta |
3884498 |
T |
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| Q |
124 |
cattacaacagagatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattac |
223 |
Q |
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| T |
3884499 |
cattacaacagagatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaa-caccaactctatgaatccaattac |
3884597 |
T |
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| Q |
224 |
gatcaaaccttgtgaagctcttatccnnnnnnnctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagtaacactaattgg |
323 |
Q |
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| T |
3884598 |
gatcaaaccttgtgaagctcttatctaaaaaagctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagtaacactaatagg |
3884697 |
T |
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| Q |
324 |
ttgttcatcatcttccaattcactctctgatctgtg |
359 |
Q |
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| T |
3884698 |
ttgttcatcatcttccaattcactctctgatctgtg |
3884733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 108 - 359
Target Start/End: Original strand, 3873957 - 3874205
Alignment:
| Q |
108 |
gcatgcaaggttcttacattacaacagagatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaact |
207 |
Q |
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| T |
3873957 |
gcatgcaaggttcttacattacaa---agatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaact |
3874053 |
T |
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| Q |
208 |
ctatgaatccaattacgatcaaaccttgtgaagctcttatccnnnnnnnctgataaagatatgactaaaaccaatacaaaaagcaacattggtaaccata |
307 |
Q |
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| T |
3874054 |
ctatgaatccaattacgatcaaaccttgtgaagctcttatccaaaaaagctgataaagatatgactaaaaccaatacaaaaagtaacattggtaaccata |
3874153 |
T |
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| Q |
308 |
aagtaacactaattggttgttcatcatcttccaattcactctctgatctgtg |
359 |
Q |
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| T |
3874154 |
aagtaacactaattggttgttcatcatcttccaactcactctctgatctgtg |
3874205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 48453465 - 48453561
Alignment:
| Q |
135 |
agatgctttacacttcaaaacaagaaagagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaac |
231 |
Q |
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| T |
48453465 |
agatgatttccacttcaaaataagaaaaagaacagtaataatcacaaaaataccgcctgaggagccacaaactctatgaatccagtaacgatcaaac |
48453561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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