View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12093_low_14 (Length: 293)
Name: NF12093_low_14
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12093_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 1696418 - 1696136
Alignment:
| Q |
1 |
tcagcaatccgtaccgttgttggtatcataggtttgttaatcacttcttcttctcttttcagtatcatttcagtttattttaactttttctcataatcga |
100 |
Q |
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| T |
1696418 |
tcagcaattcgtaccgttgttggtatcataggtttgttaatcacttcttcttctcttttcagtatcatttcagtttattttaactttttatcataatcga |
1696319 |
T |
|
| Q |
101 |
ttatcatgcatgcatgcataaagtataattttaactttttctgataatcgattttagaagtctttagttcagttacgattgattttagctttttatgtta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1696318 |
ttatcatgcatgcatgcataaagtataattttaactttttctgataatcgattttggaagtttttagttcagttacgattgattttagctttttatgtta |
1696219 |
T |
|
| Q |
201 |
atcgattaatcatacatgtttctgattgatttttgtgaaatttgaatgcagggaatgttatctcgtttggactgttcatctca |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1696218 |
atcgattaatcatacatgtttctgattgatttttgtgaaatttgaatgcagggaatgttatctcgtttggactgttcttctca |
1696136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 1685852 - 1685593
Alignment:
| Q |
10 |
cgtaccgttgttggtatcataggtttgttaatcacttcttcttctcttttcagtatcatttcagtttattttaactttttctcataatcgattatcatgc |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
1685852 |
cgtaccattgttggtatcataggtttgttaatcacttcttcttctcttttcagt-----------ttattttaactttttatcataatcgattatcatgc |
1685764 |
T |
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| Q |
110 |
atgcatgcataaagtataattttaactttttctgataatcgattttagaagtctttagttcagttacgattgattttagctttttatgttaatcgattaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1685763 |
atgcatgcataaagtataattttaactttttctgataatcgatttttgaagtttttagttcagttacgattgattttagctttttgtgttaatcgattaa |
1685664 |
T |
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| Q |
210 |
tcatacatgtttctgattgat--ttttgtgaaa-tttgaatgcagggaatgttatctcgtttggactgttc |
277 |
Q |
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||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
1685663 |
tcatacatgtttctgattgatttttttctgaaattttgaatgaagggaatgttatctcgtttggactgttc |
1685593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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