View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12093_low_18 (Length: 253)
Name: NF12093_low_18
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12093_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 8079439 - 8079672
Alignment:
| Q |
1 |
tagttgatgaagccgcgattgtgcagttgtatattatcctcatgcatcaacaaaatttatctcaattttcctcattttagtattggattcttccaaagtt |
100 |
Q |
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| T |
8079439 |
tagttgatgaagccgcgattgtgcagttgtatattatcctcatgcatcaacaaaatttatctcaattttcctcattttagtattggattcttccaaagtt |
8079538 |
T |
|
| Q |
101 |
gcatcagtgacataaacaaattcttttaatgttataggtagccacactataggagattcacgatgtactagctttagacaaagactctacaaccaaactg |
200 |
Q |
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| T |
8079539 |
gcatcagtgacataaacaaattcttttaatgttataggtagccacactataggagattcacgatgcaccagctttagacaaagactctacaaccaaactg |
8079638 |
T |
|
| Q |
201 |
ggaatggcaagtcagatttcactcttgaccaaaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
8079639 |
ggaatggcaagtcagatttcactcttgaccaaaa |
8079672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 32580740 - 32580655
Alignment:
| Q |
143 |
cacactataggagattcacgatgtactagctttagacaaagactctacaaccaaactgggaatggcaagtcagatttcactcttga |
228 |
Q |
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|||||||||||| | ||| | || || |||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
32580740 |
cacactataggaaagtcaaggtgcacaagctttaggcaaagactctacaaccaaactggaaatggcaagcaagatttcactcttga |
32580655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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