View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12093_low_19 (Length: 250)
Name: NF12093_low_19
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12093_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 36605994 - 36606219
Alignment:
| Q |
22 |
caacatttttgtcgtacataaaatgccccaactctacataaaatggcatgagatggtgcaacttgacaactataaaaataattagttgcaaccaaacaca |
121 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36605994 |
caacatttttgtcatacagaaaatgccccaactctacataaaatggcatgagatgatgcaacttgacaactataaagataattagttgcaaccaaacaca |
36606093 |
T |
|
| Q |
122 |
cttacaagcttcgcctaaaggtaattaaataataattattaattaattttccttttctcttcataaaacaatagtgtcggggacattggaaaaatgatga |
221 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| ||| |||| || |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36606094 |
cttacaagcttcacctaaaagtaattaaataataattatcaatcaattatctttttctcttcataaaacaatagtgtcggtgacattggaaaaatgatga |
36606193 |
T |
|
| Q |
222 |
ctttatttttacaattggacaataag |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
36606194 |
ctttatttttacaattggacaataag |
36606219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 247
Target Start/End: Complemental strand, 27539980 - 27539837
Alignment:
| Q |
105 |
agttgcaaccaaacacacttacaagcttcgcctaaaggtaattaaataataat-tattaattaattttccttttctcttcataaaacaatagtgtcgggg |
203 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||| | || | || ||| |||| || |||| ||||||| ||||| ||||||| | |
|
|
| T |
27539980 |
agttgcaaccaaacacacttgcaagcttcacctaaaggtaattaaagactattctagcaatcaattctctttttttcttcatcaaacattagtgtcaatg |
27539881 |
T |
|
| Q |
204 |
acattggaaaaatgatgactttatttttacaattggacaataag |
247 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27539880 |
acattgggaaaatgatgactttatttttacatttggacaataag |
27539837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University