View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12093_low_2 (Length: 837)
Name: NF12093_low_2
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12093_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 690; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 14 - 822
Target Start/End: Original strand, 18046967 - 18047777
Alignment:
| Q |
14 |
atgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18046967 |
atgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaa |
18047066 |
T |
|
| Q |
114 |
tcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttataaatcttcctccgaccattactagcctactgaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18047067 |
tcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttaaaaatcttcctccgaccattactagcctactgaa |
18047166 |
T |
|
| Q |
214 |
cttgcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagaga |
313 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18047167 |
cttgcaaactctaaaacttgctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagaga |
18047266 |
T |
|
| Q |
314 |
ttgacatgtatgccacgggggctaggacagttgactgatcttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggcta |
413 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18047267 |
ttgagatgtatgccacgggggctaggacagttgactgatcttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggcta |
18047366 |
T |
|
| Q |
414 |
agctaaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagca |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
18047367 |
ggctaaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgcagagattgaatctgcaaaagtacttgttgagaagcg |
18047466 |
T |
|
| Q |
514 |
acaccttcaacaattggaattgcgatggaatcatgtcgaccagaatgagatcatggaggaagatgagatcattttacaaggcctgcagcca---caccat |
610 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18047467 |
acaccttcaacatttggaattacgatggaatcatgtcgaccagaatgagatcatggaggaagatgagatcattttacaaggcctgcagccacaccaccac |
18047566 |
T |
|
| Q |
611 |
tcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggatatgtaatctctcatcgctcttgactcttgagttccacaattgca |
710 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18047567 |
tcacttcgaaaactagttatagatgggttttgcggcagcaggttaccagactggatatggaatctctcatcgctcttgactcttgagatccacaattgca |
18047666 |
T |
|
| Q |
711 |
atagtttgacatcactgcgggaagtgtgtaaccttaaatctttgaagacactttgcatttctaactgcttatcattaaactgtatggaaatcccttgcat |
810 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
18047667 |
atagtttgacattactgccggaagtgtgtaaccttgtatctttgaagac-ctttgcatttctaactgcttatcattaaactggagggaaatcccttgcat |
18047765 |
T |
|
| Q |
811 |
ccaagtacttat |
822 |
Q |
| |
|
|||| |||||| |
|
|
| T |
18047766 |
gcaagaacttat |
18047777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Complemental strand, 18034183 - 18033647
Alignment:
| Q |
17 |
aatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18034183 |
aatgcaagcaatcgtttgcttcagtcagatgatttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcc |
18034084 |
T |
|
| Q |
117 |
caaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttataaatcttcctccgaccattactagcctactgaactt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18034083 |
caaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttaaaaatcttcctccgaccattactagcctactgaactt |
18033984 |
T |
|
| Q |
217 |
gcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagattg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18033983 |
gcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagtttg |
18033884 |
T |
|
| Q |
317 |
acatgtatgccacgggggctaggacagttgactgatcttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggctaagc |
416 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
18033883 |
acatgtatgccacgtgggctaggacagttgactgatcttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttgggtgagc |
18033784 |
T |
|
| Q |
417 |
taaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagcaaca |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18033783 |
taaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgaaaagattgaatctgcaaaagtacttcttgagaagcgaca |
18033684 |
T |
|
| Q |
517 |
ccttcaacaattggaattgcgatggaatcatgtcgac |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18033683 |
ccttcaacaattggaattgcgatggaatcatgtcgac |
18033647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 571 - 772
Target Start/End: Complemental strand, 18033599 - 18033392
Alignment:
| Q |
571 |
ggaagatgagatcattttacaaggcctgcagccacaccat---tcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggata |
667 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| || |||| |||||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
18033599 |
ggaagatgagatcatttttctaggcctgcagccacaccaccactcacttcgaaaactagttatagatgggttttgtggcagcaggttaccagactggatg |
18033500 |
T |
|
| Q |
668 |
tgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcgggaag---tgtgtaaccttaaatctttgaagacacttt |
764 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||| ||| ||||| |
|
|
| T |
18033499 |
tggaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcccgaagaaatgagtaaccttgtatctttgcagaaacttt |
18033400 |
T |
|
| Q |
765 |
gcatttct |
772 |
Q |
| |
|
|||||||| |
|
|
| T |
18033399 |
gcatttct |
18033392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 690; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 14 - 822
Target Start/End: Complemental strand, 4398359 - 4397549
Alignment:
| Q |
14 |
atgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4398359 |
atgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaa |
4398260 |
T |
|
| Q |
114 |
tcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttataaatcttcctccgaccattactagcctactgaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4398259 |
tcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttaaaaatcttcctccgaccattactagcctactgaa |
4398160 |
T |
|
| Q |
214 |
cttgcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagaga |
313 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4398159 |
cttgcaaactctaaaacttgctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagaga |
4398060 |
T |
|
| Q |
314 |
ttgacatgtatgccacgggggctaggacagttgactgatcttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggcta |
413 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4398059 |
ttgagatgtatgccacgggggctaggacagttgactgatcttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggcta |
4397960 |
T |
|
| Q |
414 |
agctaaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagca |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
4397959 |
ggctaaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgcagagattgaatctgcaaaagtacttgttgagaagcg |
4397860 |
T |
|
| Q |
514 |
acaccttcaacaattggaattgcgatggaatcatgtcgaccagaatgagatcatggaggaagatgagatcattttacaaggcctgcagccac---accat |
610 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4397859 |
acaccttcaacatttggaattacgatggaatcatgtcgaccagaatgagatcatggaggaagatgagatcattttacaaggcctgcagccacaccaccac |
4397760 |
T |
|
| Q |
611 |
tcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggatatgtaatctctcatcgctcttgactcttgagttccacaattgca |
710 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4397759 |
tcacttcgaaaactagttatagatgggttttgcggcagcaggttaccagactggatatggaatctctcatcgctcttgactcttgagatccacaattgca |
4397660 |
T |
|
| Q |
711 |
atagtttgacatcactgcgggaagtgtgtaaccttaaatctttgaagacactttgcatttctaactgcttatcattaaactgtatggaaatcccttgcat |
810 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
4397659 |
atagtttgacattactgccggaagtgtgtaaccttgtatctttgaagac-ctttgcatttctaactgcttatcattaaactggagggaaatcccttgcat |
4397561 |
T |
|
| Q |
811 |
ccaagtacttat |
822 |
Q |
| |
|
|||| |||||| |
|
|
| T |
4397560 |
gcaagaacttat |
4397549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 14 - 553
Target Start/End: Original strand, 4498283 - 4498822
Alignment:
| Q |
14 |
atgaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaa |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498283 |
atgaatgcaagcaatcgttttcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaa |
4498382 |
T |
|
| Q |
114 |
tcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttataaatcttcctccgaccattactagcctactgaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4498383 |
tcccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttaaaaatcttcctccgaccattactagcctactgaa |
4498482 |
T |
|
| Q |
214 |
cttgcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagaga |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498483 |
cttgcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagt |
4498582 |
T |
|
| Q |
314 |
ttgacatgtatgccacgggggctaggacagttgactgatcttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggcta |
413 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4498583 |
ttgacatgtatgccatgtgggctaggacagttgactgatcttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttgggtg |
4498682 |
T |
|
| Q |
414 |
agctaaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagca |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4498683 |
agctaaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgaaaagattgaatctgcaaaagtacttcttgagaagtg |
4498782 |
T |
|
| Q |
514 |
acaccttcaacaattggaattgcgatggaatcatgtcgac |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498783 |
acaccttcaacaattggaattgcgatggaatcatgtcgac |
4498822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 4519346 - 4519882
Alignment:
| Q |
17 |
aatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4519346 |
aatgcaagcaatcgtttgcttcagtcagatgatttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatcc |
4519445 |
T |
|
| Q |
117 |
caaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttataaatcttcctccgaccattactagcctactgaactt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4519446 |
caaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttaaaaatcttcctccgaccattactagcctactgaactt |
4519545 |
T |
|
| Q |
217 |
gcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagattg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4519546 |
gcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagtttg |
4519645 |
T |
|
| Q |
317 |
acatgtatgccacgggggctaggacagttgactgatcttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggctaagc |
416 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
4519646 |
acatgtatgccacgtgggctaggacagttgactgatcttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttgggtgagc |
4519745 |
T |
|
| Q |
417 |
taaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagcaaca |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
4519746 |
taaacaacctgagagggagattagaattaaaagggttgaagttcctgcgaaataatgctgcagagattgaatctgcaaaagtacttgttgagaagcgaca |
4519845 |
T |
|
| Q |
517 |
ccttcaacaattggaattgcgatggaatcatgtcgac |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4519846 |
ccttcaacaattggaattgcgatggaatcatgtcgac |
4519882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 534
Target Start/End: Original strand, 4529533 - 4530051
Alignment:
| Q |
16 |
gaatgcaagcaatcgtttgcttcagtcagatgttttttccttctcaggcttaaagttcttgcgtgtgttgacactttgtgggttgaatattgaagaaatc |
115 |
Q |
| |
|
||||||||||||| | ||| ||||||| | ||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| | |||| |
|
|
| T |
4529533 |
gaatgcaagcaattatctgcgtcagtcaaacgttctttccttttcaggcttaaagttcttacgtgtgttgacactttgtggattgaatattctggcaatc |
4529632 |
T |
|
| Q |
116 |
ccaaatagtattgaagaaatgaagcatttaagatatattgatctatcacggaacaatgtacttataaatcttcctccgaccattactagcctactgaact |
215 |
Q |
| |
|
||||||||||||||||| ||||||||| | |||||||||||||||||| || | |||||||| | ||||||| ||| |||||||||||||| |||| |
|
|
| T |
4529633 |
ccaaatagtattgaagagatgaagcatctgagatatattgatctatcaaagagtattgtacttaaagatcttccgccgggcattactagcctacagaacc |
4529732 |
T |
|
| Q |
216 |
tgcaaactctaaaactttctgattgttctaagcttgaaatattgccagaaaatctcaatagaagtctcaggcatcttgagttaaatggttgcgagagatt |
315 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| | |||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
4529733 |
ttcaaactctaaaactttctgattgttctgagctcgaaatattaccagaaaatctcaacaaaagtcttaggcatcttgagttgaatggttgtgagagatt |
4529832 |
T |
|
| Q |
316 |
gacatgtatgccacgggggctaggacagttgactgatcttcaaacactaacactttttgtactgaactctggaagtacaagtgtaaatgagttggctaag |
415 |
Q |
| |
|
|| ||||||||||| ||| ||| ||||||| | ||||||||||||| |||||||||||||||||| | ||||||| | ||||||||||| | | || |
|
|
| T |
4529833 |
gagatgtatgccacaagggttagtacagttggttaatcttcaaacactgacactttttgtactgaacaatagaagtacgaacgtaaatgagttaggtgag |
4529932 |
T |
|
| Q |
416 |
ctaaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagcaac |
515 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||| ||||| ||||||||||||| ||||||| ||||||||| || ||||||||||||||||||| ||| |
|
|
| T |
4529933 |
ctaaacaaccttagaggaagattagaaataaaaaggttggatttcctgcgaaacgctgctgcagagattgaatttgtaaaagtacttcttgagaaggaac |
4530032 |
T |
|
| Q |
516 |
accttcaacaattggaatt |
534 |
Q |
| |
|
||||||| | ||||||||| |
|
|
| T |
4530033 |
accttcagctattggaatt |
4530051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 571 - 779
Target Start/End: Original strand, 4530142 - 4530353
Alignment:
| Q |
571 |
ggaagatgagatcattttacaaggcctgcagccacaccattcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggatatgt |
670 |
Q |
| |
|
||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4530142 |
ggaagatgagaagattttagaaggtctgcagccacaccattcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggataggg |
4530241 |
T |
|
| Q |
671 |
aatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcgggaag---tgtgtaaccttaaatctttgaagacactttgca |
767 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||||||| ||||||| ||| |||||||| |
|
|
| T |
4530242 |
aatctctcatcgctcttgactcttgagttccacaattgcaatggtttgacatcactgcccgaagcgatgcgtaaccttgtatctttgcagaaactttgca |
4530341 |
T |
|
| Q |
768 |
tttctaactgct |
779 |
Q |
| |
|
| | |||||||| |
|
|
| T |
4530342 |
tgtataactgct |
4530353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 571 - 725
Target Start/End: Original strand, 4519957 - 4520114
Alignment:
| Q |
571 |
ggaagatgagatcattttacaaggcctgcagccacacca---ttcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggata |
667 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4519957 |
ggaagatgagatcattttacaaggcctgcagccacaccaccattcacttcgaaaactagttatagatgggttttgcggcaaaaagttaccagactggata |
4520056 |
T |
|
| Q |
668 |
tgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcac |
725 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4520057 |
tgtaatctctcatcgctcttgactcttgagttccacaattgcagtagtttgacatcac |
4520114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 571 - 792
Target Start/End: Original strand, 4498870 - 4499097
Alignment:
| Q |
571 |
ggaagatgagatcattttacaaggcctgcagccacaccat---tcgcttcaaaaactagttatagatgggttttgcggcaaaaagttaccagactggata |
667 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| || |||| |||||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
4498870 |
ggaagatgagatcatttttctaggcctgcagccacaccaccactcacttcgaaaactagttatagatgggttttgtggcagcaggttaccagactggatg |
4498969 |
T |
|
| Q |
668 |
tgtaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcgggaag---tgtgtaaccttaaatctttgaagacacttt |
764 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||| ||| ||||| |
|
|
| T |
4498970 |
tggaatctctcatcgctcttgactcttgagttccacaattgcaatagtttgacatcactgcccgaagaaatgagtaaccttgtatctttgcagaaacttt |
4499069 |
T |
|
| Q |
765 |
gcatttctaactgcttatcattaaactg |
792 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4499070 |
gcatttctaactgcttatcattaaactg |
4499097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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