View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12093_low_21 (Length: 248)

Name: NF12093_low_21
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12093_low_21
NF12093_low_21
[»] chr7 (3 HSPs)
chr7 (1-243)||(4713824-4714066)
chr7 (91-135)||(35562426-35562471)
chr7 (90-173)||(21552454-21552538)
[»] chr1 (2 HSPs)
chr1 (91-173)||(27356760-27356841)
chr1 (90-173)||(13691757-13691841)
[»] chr4 (3 HSPs)
chr4 (111-173)||(29257279-29257340)
chr4 (90-173)||(23926072-23926156)
chr4 (90-173)||(5388546-5388630)
[»] chr5 (5 HSPs)
chr5 (111-172)||(39591102-39591163)
chr5 (90-151)||(6074757-6074819)
chr5 (104-174)||(8957257-8957327)
chr5 (92-132)||(34848590-34848631)
chr5 (90-134)||(29154286-29154330)
[»] chr8 (3 HSPs)
chr8 (104-134)||(1215377-1215407)
chr8 (90-134)||(14530946-14530991)
chr8 (90-173)||(32920683-32920767)
[»] chr2 (2 HSPs)
chr2 (105-134)||(5071408-5071437)
chr2 (104-173)||(35353689-35353758)
[»] chr6 (1 HSPs)
chr6 (106-134)||(11425992-11426020)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 4713824 - 4714066
Alignment:
Q  1 atcataatcagacttaacttttcaatgtactacctctttctcaaaataatagtcgtttaagacttgtgcacatcgatttttctccttccctaaattgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713824 atcataatcagacttaacttttcaatgtactacctctttctcaaaataatagtcgtttaagacttgtgcacatcgatttttctccttccctaaattgttt 4713923  T
Q  101 ttcccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatcttaatttactccattgccgctggtcctctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4713924 ttcccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatcttaatttactccattgccactggtcctctt 4714023  T
Q  201 ccggtgacggcaacaaaatagcttgactttcaccctcattgtt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4714024 ccggtgacggcaacaaaatagcttgactttcaccctcattgtt 4714066  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 35562426 - 35562471
Alignment:
Q  91 taaattgtttttccc-ttctcttttatttaaataagtgattttcaa 135  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  35562426 taaattgtttttctcattctcttttatttaaataagtgattttcaa 35562471  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 21552538 - 21552454
Alignment:
Q  90 ctaaattgtttttc-ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 173  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||||  |||  ||| |||||| |||| || ||||||| |||||    
T  21552538 ctaaatcgtttttctccttctcttttatttaaataaatgattttcacatcggattaggtttttctttcgtgatttcgtcgtctta 21552454  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 27356841 - 27356760
Alignment:
Q  91 taaattgtttttcccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 173  Q
    |||||||||||||| | || ||||||||||||||||||||||||  |||| ||| |||||| |||| || |||||||||||||    
T  27356841 taaattgtttttccttcct-ttttatttaaataagtgattttcacatcgaattaggtttttttttcgtgatttcgtcatctta 27356760  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 13691841 - 13691757
Alignment:
Q  90 ctaaattgtttttc-ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 173  Q
    |||||| ||||||| ||||| ||| |||||||||||||||||||||  |||| ||| |||| | |||  || |||||||||||||    
T  13691841 ctaaatcgtttttctccttcacttctatttaaataagtgattttcacatcgaattaggtttctcttttgtgatttcgtcatctta 13691757  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 29257279 - 29257340
Alignment:
Q  111 ttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 173  Q
    ||||||||||||||||||||||||  || ||||| |||||||||||||| ||| |||||||||    
T  29257279 ttttatttaaataagtgattttcacttctattta-gtttttatttcatgattttgtcatctta 29257340  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 23926072 - 23926156
Alignment:
Q  90 ctaaattgtttttc-ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 173  Q
    |||| ||||||||| ||||| ||| |||||||||||||||||||||  |||| ||| |||||| |||| || ||||||| |||||    
T  23926072 ctaacttgtttttctccttcccttctatttaaataagtgattttcacatcgagttaggtttttctttcgtgatttcgtcgtctta 23926156  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 5388546 - 5388630
Alignment:
Q  90 ctaaattgtttttc-ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 173  Q
    |||||| ||||||| ||||| || ||||||||||||||||||||||  |||| ||| |||||| |||| ||  |||||| |||||    
T  5388546 ctaaatcgtttttctccttccctcttatttaaataagtgattttcacatcgaattaggtttttctttcgtgagttcgtcgtctta 5388630  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 39591102 - 39591163
Alignment:
Q  111 ttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctt 172  Q
    ||||||||||||||||||||||||| || ||||| |||||| |||| || ||||||| ||||    
T  39591102 ttttatttaaataagtgattttcaaatcaatttaggtttttctttcgtgatttcgtcttctt 39591163  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 6074819 - 6074757
Alignment:
Q  90 ctaaattgtttttc-ccttctcttttatttaaataagtgattttcaagtcgatttatgttttt 151  Q
    |||||| ||||||| ||||| |||||||||||||||||||||||||  |||| ||| ||||||    
T  6074819 ctaaatcgtttttctccttcccttttatttaaataagtgattttcacatcgaattaggttttt 6074757  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 8957257 - 8957327
Alignment:
Q  104 ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatcttaa 174  Q
    |||||| ||||||||||||||||||||||||  |||| ||| |||||| |||| || |||| || ||||||    
T  8957257 ccttcttttttatttaaataagtgattttcacatcgaattaggtttttctttcgtgatttcatcgtcttaa 8957327  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 34848631 - 34848590
Alignment:
Q  92 aaattgtttttcccttctcttttat-ttaaataagtgatttt 132  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  34848631 aaattgtttttcctttctcttttatgttaaataagtgatttt 34848590  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 29154286 - 29154330
Alignment:
Q  90 ctaaattgtttttcccttctcttttatttaaataagtgattttca 134  Q
    |||| |||||||| | |||||||||||| ||||||||||||||||    
T  29154286 ctaacttgttttttctttctcttttattgaaataagtgattttca 29154330  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 134
Target Start/End: Complemental strand, 1215407 - 1215377
Alignment:
Q  104 ccttctcttttatttaaataagtgattttca 134  Q
    |||||||||||||||||||||||||||||||    
T  1215407 ccttctcttttatttaaataagtgattttca 1215377  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 14530991 - 14530946
Alignment:
Q  90 ctaaattgtttttc-ccttctcttttatttaaataagtgattttca 134  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||    
T  14530991 ctaaatcgtttttctccttctcttctatttaaataagtgattttca 14530946  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 32920683 - 32920767
Alignment:
Q  90 ctaaattgtttttc-ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 173  Q
    |||||| ||||||| |||||  ||||||||||||||||||||||||  |||| ||| |||||| |||  || ||||||| |||||    
T  32920683 ctaaatcgtttttctccttcctttttatttaaataagtgattttcacatcgaattaggtttttcttttgtgatttcgtcgtctta 32920767  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 134
Target Start/End: Complemental strand, 5071437 - 5071408
Alignment:
Q  105 cttctcttttatttaaataagtgattttca 134  Q
    ||||||||||||||||||||||||||||||    
T  5071437 cttctcttttatttaaataagtgattttca 5071408  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 35353689 - 35353758
Alignment:
Q  104 ccttctcttttatttaaataagtgattttcaagtcgatttatgtttttatttcatggtttcgtcatctta 173  Q
    ||||| ||||||||||||||||||||||| |  |||| ||| |||||| |||| || ||||||| |||||    
T  35353689 ccttcccttttatttaaataagtgatttttacatcgaattaggtttttctttcgtgatttcgtcgtctta 35353758  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 11425992 - 11426020
Alignment:
Q  106 ttctcttttatttaaataagtgattttca 134  Q
    |||||||||||||||||||||||||||||    
T  11425992 ttctcttttatttaaataagtgattttca 11426020  T

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