View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12093_low_25 (Length: 244)
Name: NF12093_low_25
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12093_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 38917364 - 38917512
Alignment:
| Q |
1 |
attttgtctaaggagacaaaatttattaagcaactaaattaaaatgcaatagaaggataatatacttgacataaaaaaggataatatcttcaatccaaag |
100 |
Q |
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| T |
38917364 |
attttgtttaaggagacaa--tttattaagcaactaaattaaaatgcaatagaaggataatatacttgacataaaaaaggataatatcttcaatccaaag |
38917461 |
T |
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| Q |
101 |
aatattataagaagataaacaatcttaaaaattgtgttgtcgcattagcac |
151 |
Q |
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| T |
38917462 |
aatattataagaagataaacaatcttaaaaattgtgttgtcgcattagcac |
38917512 |
T |
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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 38917652 - 38917716
Alignment:
| Q |
152 |
atgattcgatgaaaagaaatgaaaacggaagctaaaacgattaccatcaaaaagcatcatcctaa |
216 |
Q |
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| T |
38917652 |
atgattcgatgaaaagaaatgaaaacggaagctaaaacgattaccatcaaaaagcatcatcctaa |
38917716 |
T |
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