View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12093_low_4 (Length: 525)
Name: NF12093_low_4
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12093_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 73 - 442
Target Start/End: Original strand, 33652156 - 33652528
Alignment:
| Q |
73 |
gaaacattcatacgcaaggtatgtctttaatcctcaatttcaactaataacctttaatatttcattacatgaacttatacaattcgatacttaaaaggac |
172 |
Q |
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| T |
33652156 |
gaaacattcatacgcaaggtatgtctttaatcctcaatttcaactaataacctttaatatttcattacatgaacttatacaattcgatacttaaaaggac |
33652255 |
T |
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| Q |
173 |
aagacaaagcattctaaattcacatagaatctatatttagatcaaccatcactaattagtatagtatctatcattgaatacctcataggaaatcataaaa |
272 |
Q |
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| T |
33652256 |
aagacaaagcattctaaattcacatagaatttatatttagatcaaccatcactaattagtatagtatctatcattgaatacctcataggaaatcataaaa |
33652355 |
T |
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| Q |
273 |
catgaaaatatacatggaatactaaaatagtaccaaccagaattttctgcaaaactatccat---ttaaaaccatgaatgatattaaaacgaaatcaaac |
369 |
Q |
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| T |
33652356 |
catgaaaataaacatggaatactaaaatagtaccaaccagaattttctgcaaaactatccatcagttaaaaccatgaatgatattaaaacgaaatcaaac |
33652455 |
T |
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| Q |
370 |
atttttgtagaatttattagaaataaccaattagcatacgaaggcgatgcaattggtcccatatcattgaata |
442 |
Q |
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| T |
33652456 |
atttttgtagaatttactagagataaccaattagcatacgaaggcgatgcaattggtcccatatcattgaata |
33652528 |
T |
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Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 237 - 427
Target Start/End: Original strand, 4365381 - 4365576
Alignment:
| Q |
237 |
tatctatcattgaatacctcataggaaatcataaaacatgaaaatatacatggaatactaaaatagtaccaaccagaat-tttctgcaaaactatccat- |
334 |
Q |
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| T |
4365381 |
tatctatcattgaataccttatagaaaggtataaaacataaaactatatatagaatactataacagtaccaaacaaaaaatttctgcaaaactatccttc |
4365480 |
T |
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| Q |
335 |
--ttaaaaccatgaatgatat-taaaacgaaatcaaacatttttgtagaatttattagaaataaccaattagcatacgaaggcgatgcaattggtc |
427 |
Q |
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| T |
4365481 |
aattaaaaccatgaatgatatgtaaaatgaaatcaaacatttctgtagaatttattggagataaccaattaacatacgaaggagatgcagttggtc |
4365576 |
T |
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