View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12093_low_7 (Length: 438)
Name: NF12093_low_7
Description: NF12093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12093_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 216 - 419
Target Start/End: Original strand, 41754215 - 41754418
Alignment:
| Q |
216 |
gtccatggcttagtgtaagtataaatgttaagtaaaattatgttaaccactcactataatgcttttattgtttactataaatgcctcgtaatcgttgcca |
315 |
Q |
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| T |
41754215 |
gtccatggcttagtgtaagtataaatgtgaagtaaaattatgttaaccactcactataatgcttttattgtttactataaaagcctcgtaatcgttgcca |
41754314 |
T |
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| Q |
316 |
gcaactgtcacaagggcaacagaggattgaaggtcttgtttggtatagacannnnnnngaattaacttctcaagtgagtcaatttggacagtcatatttg |
415 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41754315 |
gcagctgtcacaagggcaacagaggattgaaggtcttgtttggtatagacatttttttgaattaacttctcaagtgagtcaatttggacagtcatatttg |
41754414 |
T |
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| Q |
416 |
gtcc |
419 |
Q |
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|||| |
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| T |
41754415 |
gtcc |
41754418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 41754012 - 41754162
Alignment:
| Q |
13 |
agatgaaaagttacagcgtttatccgaggtaaacacccgagtggttccaataacgcaattgctactttatttattcctaaattgtggatgcgttgaacat |
112 |
Q |
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| T |
41754012 |
agatgaaaagttacagcgtttatccgaggtaaacacccgagtggttccaataacgcaattgctactttatttattcctaaattgtggatgcgttgaacat |
41754111 |
T |
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| Q |
113 |
ttatggatagttgattgataagggttgtagtgaaggattttatctcctacc |
163 |
Q |
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| T |
41754112 |
ttatggatagttgattgataagggttgtagtgaaggattttatctcctacc |
41754162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 41758293 - 41758417
Alignment:
| Q |
39 |
aggtaaacacccgagtggttccaataacgcaattgctactttatttattcctaaattgtggatgcgttgaacatttatggatagttgattgataagggtt |
138 |
Q |
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| T |
41758293 |
aggtaaacatccaattggttccaataatccaattgctactttatttattcccaaattgtggatgcgttgaacatttatggatagttgattgataaggctt |
41758392 |
T |
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| Q |
139 |
gtagtgaaggattttatctcctacc |
163 |
Q |
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||||||||||||||||| ||||||| |
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| T |
41758393 |
gtagtgaaggattttatttcctacc |
41758417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 419
Target Start/End: Original strand, 41758502 - 41758649
Alignment:
| Q |
272 |
taatgcttttattgtttactataaatgcctcgtaatcgttgccagcaactgtc-acaagggcaacagaggattgaaggtcttgtttggtatagacannnn |
370 |
Q |
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|||||||| |||||||||||| ||| || |||||| ||||||| || || | ||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
41758502 |
taatgcttctattgtttactaaaaaagcagtgtaatcattgccag-aattgacgacaagagcaacagaggattggaggtcttgtttggtatagacatttt |
41758600 |
T |
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| Q |
371 |
nnngaattaacttctcaagtgagtcaatttggacagtcatatttggtcc |
419 |
Q |
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|||| ||||||||||||||||||||| |||||||| |||||||| |
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| T |
41758601 |
gtttgattagcttctcaagtgagtcaatttgaacagtcatgtttggtcc |
41758649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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